Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sain12g00299	ATGGCAAATTCCTTAGCTCGGTTCGAGTCTATCAAGAAGTCTCGCAATCGCTTCGTCATTGCCGTTGAAGATGTGAGTGATTTGTGGCCGCTTGTCAAGGAGGGATTTGAGGATCGACTTCCATTTAAAAGAGCTATATTGAACAACAAAACCCGTAATCCTGTGTCTGTGGATAACCTGCCAGCTGAGTTTATACTGACAACAGATTCAAGACTGCGCAGCCAGTTCCCTCAGGAGCAATTGTCGTTTTGGTTTCGAGAACCATATGCAACTGTGGTTGTTGTGACCTGCGAGGACCTAGATGAGTTCAAGACAGTCCTAAAACCACGTCTGAAAGCAATTGTGCAAAATGATGAGGAGTGGTTTATTGTCTTTGTGTCTAAAGCTGCACCCAATAACAACCAAGCAATCAACAGAGCGAAAAAAGTTTATGCCAGACTTGAAGTTGATTTCAACTCAAGGAAGAGGGAAAGGTGCTTGAAATTTGATCTACATGGACCTGAAGCAACCTTTTGGGATGAGCTGGAACTAAAATCCATCGAGTGCCTCAGAAACACTCTTGATAGGCGTATCCAGTTATATGAGGAGGAGATTCGTAAGCTCAGTGAACAACGTTTTATTCCAGTTTGGAGCTTTTGTAGTTTTTTCATTCTGAAGGAAAGCCTGGCATTCATGTTTGACATGGCTGAACTTCATGAGGATTCATTACGGGAATATGATGAACTAGAGCTTTGTTACATGGAAACAGTTAACAATGCAGGCAAACATAGGGACTTTGGAGGAATGGACCATGGAGATGATCAAGCTGCAATACTAGACCCTGGCAACAAACAACTGACACAGATTGTTCAAGATAATTCCTTTAGGGAGTTTGAATTCCGACAGTACCTGTTTGCCTGTCAAGCTAAGCTATTGTTCAAGCTACACCGGCCTTTTGAGGTTGCATCAAGGGGATTTTCGTTTGTAATTAGCTTCTCAGAAGCATTGGCCCAGCACGAGAGTAGTTTGCCCTTCTGTATGAGAGAAGTTTGGGTCCTAACAGCATGCGTGGGCTTGGTCAGTGCAACTCCGGAGCATTACAGAGAAGCACTAGTAGCACGAGAGATAAAAAAAGAATATTATCGTGTACGGGGGGAATTATATTCTCTATGTCGAGCTAAGTTAATGAGGCTTGCATATTTACTTGGGTATGGATCTGGTATAGAAAGAAGTCCAGTCAACAGTGCTTCACTTAGCATGCTACCTTGGCCTAAGCCAGCAGTTTGGCCTACATTTCCCTCTGATGCTTCATCCGAGGTCCTTGTGAAAGAAAAGATGATTCTTCAAGTTACTCCAAGGATCAAGCACTTCGGTATTCAGAGGAAACCGTTGCCTCTTGAACCATCTTCTCTTCTGCACGAGGCTAATCGTGGAGGAGACTCTCTTTCTGCTGGAAATATGATTGAAGTTCCTGATGGTCGCTCAACATCTCTAGATGGGACCAATTCTACACCAGGAAACTTTGAGAGCTCCACTGATTCTTCCAAGAGATTTGCAGAACTTTTTGTGGCTGCTGAGCATGCTCTCCGTAGGACTATTTCTGATCCTGATTTATGGAAATCATTATCATCTTTAGAGGAGTTTGAGAAAAAATATTTGGAGCTAACAAAGGGTGCTGCTGATAATTATCATTATTCATGGTGGAAAAGACATGGGGTTGTCCTTGATGGTCAAAGTGCATCTGTTTTATTTAAGCATGGTAACTATGATCTAGCTGCAAAGTCATATGAGAAGATTTGTGCTCTTTATTCTGGTGAAGGATGGCAAGATTTGTTGGCGGATTTGCTTCCTAATTTAGCCGAATGCCAGAAGATACTTGATGATCAAGCTGGTTACCTTTCATCTTGTGTGAGATTGCTTTCTCTTGATAAGGGCTTGTTCTTGACCAAGGAACGCCAAGTTTTTCAGTCAGAAGTAGTTCGTATTGCACACAGTGAAATGGAGGATCCTGTGCCTTTAGATGTCTCGTCGTTAATAACATTCTCTGGTAATTCAGGGCCACCCATGGAGCTATGTGCTGGGGATCCGGGTACCTTGTCTGTAGCTTTATGGAGTGACTTTCCTGATGATATTGCTCTTGAATCACTTAGTCTCACCTTGACAGCTACCAACAACGCTGATGAACTCGTTAAGGCAATCAAGAGCAGTGATGTTACTATACTGAACCCTGGTAGAAATACAATTACTCTTTCCTTGCCCCCACAGAAACCTGGTTCCTATGTCTTGGGGGTTCTTACAGGGCAGATTGGTCATTTACGATTTAGGTCTCATGGTTTCTCCAGAGGTGGGCCTGCAGATAGTGATGATCTTATGAGTTACGACAAGCCAACTAGGCCAATTTTAAAGGTGTTCAGACCAAGGTCACTTGTCGATCTTGCTGCAGCAGTTTCATCTGCATTACTAATGAATGAGCCTCAGTGGGTCGGGATAATCGTGAAACCATGCGGTTACCCTCTCAAGGGTGCTGTTTTTCACGTTGACACTGGCCCTGGGTTGAGGATTGAGGAATCATGTGCCATCGAAATGGAGACGTATGTGAATGCACCACGGAAGGCAGATGGGTTGCAGGATGCTGATGGTGATAGTAATAATGCTTCTAATGTTCCCAAAGAATTTACTCAACTTACTCTTAGGAATGGTAGTATAGAGTTACCTGATTGGGCAAGCAATATAGTTAGTGTTGTATGGATTCCTGTGTGTGCCATCAATGATGGGCTAGCAAGAGGAACAACTGCAGGGGCAATCACTTCCCAAAGAGCAAGTGTTGTCGATGGACTGAGGACAGTAGCTCTGAAACTTGAATTTGGAGTGACGCATAATCAGATATTTGAAAGGACTGTAGCCATTCATTTCACTGACCCATTCCATGTCAGCACACGTGTATCAGATGAAGGCAGTGATGGTGCTTTGCTTTTGCAGGTGATACTACACTCACAGGTGAAGGCTTCGTTAACTATTCATGATGCTTGGTTAGATCTACAAGATGGTTTTACTCATGCTGGACGGGGAGATGGGAGACCAACATCTGACTGTTTCCCTCTTGTAGTTCCCCCAGCGTCTAGAGCTGGAATCTTGTTCGGTATATCCCTCGGAACTACAACCACTAAAGATGAAGAGAAAGTGCTGCATCCTGATACAGTATTAAATATTAGATATGGAATTGTTGGGGATAGAAACATTGGCTCGCATACCCCCGTGACTCTGGAACCCAAACGAGCCGAGGATGATGCCACACCATTGTTGACATTCAGAAGTGCTCTTGCTTTACAACGGCCAGTGCTGGAACCTTTCTTAGCGGTTGGTTTTCTTCCTCTTCCTTCAGATGGTCTTATAGTTGGGAAGCTATTCACAATGAAATGGAGACTCGAAAGGTTGAAGTTTTTTGAGGAGGAATCAGCTTCTGATAAAAACGATGGAGTAGTGTATGAAGTGAAAGCGAATTCAAAGAATTGGATGATTGCCGGGAGGAAGCGAGGCCATGCCCCTCTCTCCATGAAGCAAGGTTCAAGAATCGAGATTTCAATATTGTGCGTACCGCTAGCTACTGGATACGTTCGGCCTCCACAACTGGAGCTACCAAACGTGAAACGGGCAAATATATGTTGCAATCCTGCTGGCCCCCATTTGGTGTGTGTCTTGCCCCCACCTCTCAGCTCATCTTTTTGCATTCCATCCTGA	3717	43.99	MANSLARFESIKKSRNRFVIAVEDVSDLWPLVKEGFEDRLPFKRAILNNKTRNPVSVDNLPAEFILTTDSRLRSQFPQEQLSFWFREPYATVVVVTCEDLDEFKTVLKPRLKAIVQNDEEWFIVFVSKAAPNNNQAINRAKKVYARLEVDFNSRKRERCLKFDLHGPEATFWDELELKSIECLRNTLDRRIQLYEEEIRKLSEQRFIPVWSFCSFFILKESLAFMFDMAELHEDSLREYDELELCYMETVNNAGKHRDFGGMDHGDDQAAILDPGNKQLTQIVQDNSFREFEFRQYLFACQAKLLFKLHRPFEVASRGFSFVISFSEALAQHESSLPFCMREVWVLTACVGLVSATPEHYREALVAREIKKEYYRVRGELYSLCRAKLMRLAYLLGYGSGIERSPVNSASLSMLPWPKPAVWPTFPSDASSEVLVKEKMILQVTPRIKHFGIQRKPLPLEPSSLLHEANRGGDSLSAGNMIEVPDGRSTSLDGTNSTPGNFESSTDSSKRFAELFVAAEHALRRTISDPDLWKSLSSLEEFEKKYLELTKGAADNYHYSWWKRHGVVLDGQSASVLFKHGNYDLAAKSYEKICALYSGEGWQDLLADLLPNLAECQKILDDQAGYLSSCVRLLSLDKGLFLTKERQVFQSEVVRIAHSEMEDPVPLDVSSLITFSGNSGPPMELCAGDPGTLSVALWSDFPDDIALESLSLTLTATNNADELVKAIKSSDVTILNPGRNTITLSLPPQKPGSYVLGVLTGQIGHLRFRSHGFSRGGPADSDDLMSYDKPTRPILKVFRPRSLVDLAAAVSSALLMNEPQWVGIIVKPCGYPLKGAVFHVDTGPGLRIEESCAIEMETYVNAPRKADGLQDADGDSNNASNVPKEFTQLTLRNGSIELPDWASNIVSVVWIPVCAINDGLARGTTAGAITSQRASVVDGLRTVALKLEFGVTHNQIFERTVAIHFTDPFHVSTRVSDEGSDGALLLQVILHSQVKASLTIHDAWLDLQDGFTHAGRGDGRPTSDCFPLVVPPASRAGILFGISLGTTTTKDEEKVLHPDTVLNIRYGIVGDRNIGSHTPVTLEPKRAEDDATPLLTFRSALALQRPVLEPFLAVGFLPLPSDGLIVGKLFTMKWRLERLKFFEEESASDKNDGVVYEVKANSKNWMIAGRKRGHAPLSMKQGSRIEISILCVPLATGYVRPPQLELPNVKRANICCNPAGPHLVCVLPPPLSSSFCIPS	1238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sain12g00299	1238	Coils	Coil	177	204	-	-
	Sain12g00299	1238	PANTHER	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1-TMEM1	9	1237	IPR045126	GO:0006891(PANTHER)\|GO:0034498(PANTHER)\|GO:0048193(InterPro)\|GO:1990071(InterPro)\|GO:1990071(PANTHER)
	Sain12g00299	1238	MobiDBLite	consensus disorder prediction	488	505	-	-
	Sain12g00299	1238	Pfam	Trafficking protein particle complex subunit 10, TRAPPC10	1129	1207	IPR022233	-
	Sain12g00299	1238	MobiDBLite	consensus disorder prediction	473	505	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sain12g00299	K20307	trafficking protein particle complex subunit 10

Event-related genes

Select	Gene_1	Gene_2	Event_name
	138688	Sain12g00299	Sain13g02487

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Sain	Sain-Chr12:5438073	Sain13g02487	Sain-Chr13:134800012	wgd