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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00311 ATGGGGAAGAAGCGAAAACACACTGAAGTAGAGGTGCCGGCGGCAAAGGAAGAAACGGCACCGGAGAGACCTAAACGTACTCTGTTAGGTTGGAAAGACAAACCGGAAAACCAACACGATTCAACAACCTCTACAGTTTTTAGAAACAAAGAGAAAGTTCTCGTCACTTGCTCTCGTCGCATTAATTACAGGTATCGACATTTGATGTTGAATTTGGTATCGGTTTTACCTCATTGTAAGAAAGATAATAAAGTTGAATCCAAGGCTACCAAAGGAGCAACTCTAAATGAGCTTGTTGAACTTAAGAACTGTTCTTCCTGTCTCTTTTTTGAGTGCAGGAAGCACAAAGACCTTTACTTGTGGATGTCCAAGTGCCCGAATGGTCCATCTGTGAAGTTTCTAGTTAATGCAGTTCACACAATGGAAGAGTTGAAGCTCACTGGGAATCATCTTAAAGGTTCTCGTCCACTTCTCACATTTTCATCAAATTTTGATAAAGATCCACACTGGAAACTTCTGAAAGAAATGATTATTCAGATATTTGGAACTCCCAAGGAACACAGGAAATCGAAGCCTTACCATGATCATGTCTTTGTCTTCTCGATTGTTGATGACCACATATGGTTCCGTAATTACCAGATATCGTGTCCTCATACCGGAGCAGATAAAATTGATCGTGGAGGCATGGAAAAGATGACCCTTATTGAGGTTGGTCCAAGATTTTGTTTGAATCCAATCAAGATATTTGGTGGTAGCTTCGGAGGGCCAACACTATATGAGAATCCTTTCTACGTTTCACCAAATCAGATACGATCATTGGAGAAGAGAAAGAAAGCGGGCAAGTATGCAAAGAAGGTTAAAGCCAAGACGAGAAGGAAAATGCACGAGATGAGCAACCTGCTAGAGACGGATGAGTTTGCAGACATGTGGAAGGAATGA 939 41.43 MGKKRKHTEVEVPAAKEETAPERPKRTLLGWKDKPENQHDSTTSTVFRNKEKVLVTCSRRINYRYRHLMLNLVSVLPHCKKDNKVESKATKGATLNELVELKNCSSCLFFECRKHKDLYLWMSKCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDKDPHWKLLKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISCPHTGADKIDRGGMEKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRSLEKRKKAGKYAKKVKAKTRRKMHEMSNLLETDEFADMWKE 312
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00311 312 FunFam Ribosome biogenesis protein, putative 52 243 - -
Sain12g00311 312 SMART Brix-2 54 248 IPR007109 GO:0006364(InterPro)|GO:0019843(InterPro)
Sain12g00311 312 ProSiteProfiles Brix domain profile. 51 254 IPR007109 GO:0006364(InterPro)|GO:0019843(InterPro)
Sain12g00311 312 MobiDBLite consensus disorder prediction 1 43 - -
Sain12g00311 312 Pfam Brix domain 58 247 IPR007109 GO:0006364(InterPro)|GO:0019843(InterPro)
Sain12g00311 312 Gene3D - 51 243 - -
Sain12g00311 312 MobiDBLite consensus disorder prediction 1 39 - -
Sain12g00311 312 SUPERFAMILY Class II aaRS ABD-related 52 251 - -
Sain12g00311 312 PANTHER RIBOSOME BIOGENESIS PROTEIN BRIX 3 311 IPR026532 GO:0000027(PANTHER)|GO:0003723(PANTHER)|GO:0005730(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00311 K14820 ribosome biogenesis protein BRX1