AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00313 | ATGGGGGATCGGTTAAGATCGGCGGCGTTTGACGACTTGCCGTCGCATTTGATTCTTGAAATCTTGACCTCCGGTGGCCGATTGGGTGGGGTGGATCTTGTGTGTTTGGAGCTAACTAATACGACTTTCAGAGATGCTTATGGGTTGGTTCCTCATAAGTTGAAATCGTTGGTTGATTTTGCAGCTTTTCAGCTTTGTGGGTCACATCCTATTTACGTTTGCTTGAGTTACAGAGCTCAGGAAGAGCTATTAACTCGATGTGGTGGAAATTGGAAGAGGGTTTTGAGGTTCTTGCAATCAGTTCATCAGTCCTCAGATGTGGTTGAAACCTCTGCAGGCAATATGCAAATTAGGAGTGGAAGGTATCACACATTATTGATCAAGGATTCAATGGTTTACTCTTGTGGTTCTAGTTTGTGTGGTGTTCTTGGTCATGGTCCTGAAACAACACAATGTGTAGCATTCACTCCGATCAAGTTCCCGTATCCTGTCCATGTGACGCACGTTTCAGCCTCCCACAATCATGCTGCCTTTGTGACACAATCAGGAGAGGTTTTCACATGTGGTGACAACTCGTCCTTCTGTTGTGGGCATAGTGATACAAGTCGTCCAATATTCAAGCCTAGGCTAGTCGAAGCACTGAAGGAAGTTCCTTGCAAGCAGGTTGCTGCAGGGGTTAGCTTTACTGTGTTTCTGACAAGAGAAGGTCAAGTATACACATGTGGGACCAGCGCACACGGCCAACTCGGCCATGGTGACACCCTGGACCGACCAACCCCAAAACTTGTGGAATCCCTTGTGAGCGTTGGCCCTGTTGTCCAGATTGCTGCTGGCCCGAGTTATGCCCTTGCTGTCACCAATGATGGAACCGTTTATTCATTTGGGTCCGGAACCAATTTCTGTCTTGGCCACGGGGAACAGCACAATGAACTCCGCCCCCGGCCACTCCTCTCGTTCAGGAGAAAGGGTATCCACATTGTTCGTGTCTCTGCTGGCGATGAACATGTTGTTGCACTAGATTCTAACGGATATGTCTACACTTGGGGAAAAGGCTACTGTGGGGCACTTGGCCATGGGGATGAGATCGATAAGACGACCCCTGAGCTCCTGAGTAGCCTCAAAACTCACCTTGCTGTTCAGGTGTGTGCAAGCAAGAGGAAAACCTTTGTTTTGGTGGATAATGGGTGTTTATATGGATTTGGATGGATGGGTTTTGGCAGCTTGGGGTTTCCAGATAGAGGGTTATCAGATAAAGTCTTGAAACCTAGCATGCTTCACAGTCTAAAAGGTCATCATATTTCTCAAGTCAGCACAGGCTTGTATCATTCAGTCGTTGTCACGAATCAAGGTCGTATTTTTGGATTCGGAGACAACGAACGAGCCCAGCTCGGCCACGATGAATTGAGAGCTTGTCGCAATCCAACTGAAATCTTGGTTCAAGAAGCTGCATGCTAA | 1455 | 47.56 | MGDRLRSAAFDDLPSHLILEILTSGGRLGGVDLVCLELTNTTFRDAYGLVPHKLKSLVDFAAFQLCGSHPIYVCLSYRAQEELLTRCGGNWKRVLRFLQSVHQSSDVVETSAGNMQIRSGRYHTLLIKDSMVYSCGSSLCGVLGHGPETTQCVAFTPIKFPYPVHVTHVSASHNHAAFVTQSGEVFTCGDNSSFCCGHSDTSRPIFKPRLVEALKEVPCKQVAAGVSFTVFLTREGQVYTCGTSAHGQLGHGDTLDRPTPKLVESLVSVGPVVQIAAGPSYALAVTNDGTVYSFGSGTNFCLGHGEQHNELRPRPLLSFRRKGIHIVRVSAGDEHVVALDSNGYVYTWGKGYCGALGHGDEIDKTTPELLSSLKTHLAVQVCASKRKTFVLVDNGCLYGFGWMGFGSLGFPDRGLSDKVLKPSMLHSLKGHHISQVSTGLYHSVVVTNQGRIFGFGDNERAQLGHDELRACRNPTEILVQEAAC | 484 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00313 | 484 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 183 | 235 | IPR000408 | - | |
| Sain12g00313 | 484 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 342 | 391 | IPR000408 | - | |
| Sain12g00313 | 484 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 131 | 179 | IPR000408 | - | |
| Sain12g00313 | 484 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 235 | 285 | IPR000408 | - | |
| Sain12g00313 | 484 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 182 | 232 | IPR000408 | - | |
| Sain12g00313 | 484 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 288 | 339 | IPR000408 | - | |
| Sain12g00313 | 484 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 130 | 182 | IPR000408 | - | |
| Sain12g00313 | 484 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 115 | 315 | IPR051210 | - | |
| Sain12g00313 | 484 | SUPERFAMILY | RCC1-BLIP-II | 113 | 412 | IPR009091 | - | |
| Sain12g00313 | 484 | PRINTS | Chromosome condensation regulator RCC1 signature | 345 | 361 | IPR000408 | - | |
| Sain12g00313 | 484 | PRINTS | Chromosome condensation regulator RCC1 signature | 452 | 466 | IPR000408 | - | |
| Sain12g00313 | 484 | PRINTS | Chromosome condensation regulator RCC1 signature | 436 | 452 | IPR000408 | - | |
| Sain12g00313 | 484 | PRINTS | Chromosome condensation regulator RCC1 signature | 290 | 306 | IPR000408 | - | |
| Sain12g00313 | 484 | PRINTS | Chromosome condensation regulator RCC1 signature | 326 | 339 | IPR000408 | - | |
| Sain12g00313 | 484 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 343 | 394 | IPR000408 | - | |
| Sain12g00313 | 484 | Gene3D | - | 99 | 268 | IPR009091 | - | |
| Sain12g00313 | 484 | Gene3D | - | 269 | 483 | IPR009091 | - | |
| Sain12g00313 | 484 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 433 | 462 | - | - | |
| Sain12g00313 | 484 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 236 | 288 | IPR000408 | - | |
| Sain12g00313 | 484 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 395 | 449 | IPR000408 | - | |
| Sain12g00313 | 484 | SUPERFAMILY | RCC1-BLIP-II | 379 | 478 | IPR009091 | - | |
| Sain12g00313 | 484 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 289 | 342 | IPR000408 | - | |
| Sain12g00313 | 484 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 450 | 484 | IPR000408 | - | |
| Sain12g00313 | 484 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 436 | 446 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00313 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:5756118 | Sain9g03915 | Sain-Chr9:209796570 | dispersed | |
| Sain | Sain-Chr12:5756118 | Sain3g01313 | Sain-Chr3:57252612 | transposed |