AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00320 ATGAGAGGACCCTTAGGTTCAGTGATTGGTAAGTACCCATCAAGCGATGGAAATGGCGAACTGTGTGGTGGACATGGGATCATAAAACACAACAGAAAATGCAGAGATATTGTGTTTCTTGTTTTCTTCATAGCTTTCTGGATCGCCATGATTGTTAACTCCAGTTTTGGCTTCAATCAAGGAAACCCATTAAGGCTAAACTTCGGGTTGGATTATAAAGGAAATGTATGTGGGGGCAAACACGCAGATTTCAACCTCCAACAATTGGAACTTAAATATTGGGTTAATCCTAACCAAGTTTACCAAAGCGGATTAAAAAACAGCCAAGTAAAACTATCTAACGCCCGATCCATATGCTTGTTGGATTGTCCCATACCATCCGAAGATTCTCTGAATTGGGTTTGTGATTATCCAGAGGGCGATCTTCGTCTTTCTTTAGATGATTGGATCGATATGAACTATGATTATTTTGCCGATCTTACCCCTGAACTAAGGAATACTTCCCTTCAACTTCAAGGCCCTTGTTACCCCGTTATTTTTCCAAGCGTAAACGTTTATTGGAGCTGCCAGTTTATTGCACGCCCATCAAACGTGTCTTTAACACATTGGAAGCAAATGAATGGGGTTACAATTGCTGATGATATGGTTATAGATAAATCTATTCACAAGTTGATTAACTCACGATCCTTGGTGTTGAAGAGATATGTGGCTGATGTTGGAAAATCGTGGCCTGTGTTGATTGTTTGTGGAGGATTGCTGCCTCTATTTCTATCGTTGTTATGGCTTTTGATGATCCGGCATTTTGTAACTGGAATGCCGTGGGTTACCGTCTTTCTCTTTAATGGTCTCATAATATCCGTCACAATGTTCTACTACATGAAAGCTGGATGGATTGGAAACGATGCTATCTCACCCATCATTGGTGAACACGATCCGTACTATCATGTTTCTGCAAGGGAGCAACATCATATCCGTGCTGCTGCATTTCTCATGACTTGTGTGATGATCGTTGCTGTTCTATCATCTATAGCGATTGTTCGTCGGATTCTTATGGCAACCTCGGTACTCAAGGTTGCTGCAAAGGTCATTGGTGAAGTTCAGGCTCTCATAATATTTCCAGTCATTCCATACGTAATCCTTGCAATCTTTTACATGTTCTGGTTGTCGGCTGCTCTCCATCTTTTCAGTTCCGGTCAGGTCGTCCGCAATGATTGCAACACAAACTGCTGTGCATACGATCTCAAAGCCAAAAGGGTCAGTTGTGACGATTGCTGTGGCTATAGCATCCGTTACACCTCTCATATCGCAGCTTCGATCCTATTCCACCTGTTTGGATGCTACTGGGCCACTCAGTTTATCATAGCATGCTCTTCAACTGTGATTGCTGGTTCCGTAGCTTCCTACTATTGGGCTCGTGGGGAAACTTCGACAGCGATTCCATTTCTTCCGGTTTTCTCCTCGATGAAGCTACTCATGCGCTACAGCCTTGGATCTGTGGCAATCGGTTCGTTGATCGTGTCTTTTGTTGAGTCGACTCGGTTCATACTTGAGGCCATACGTCGCAGATTGAAAGTTGCTGATATTCTTCCCGAAAGCTGGATTAAGAGGATGATGTTCTATACTTCTCGGTTTTGCTTGAAGTGTATTGAGTTGACCATAAAAGCCGTAAACCGCAATGCATACATTATGATTGCTATAACGGGCAAAGGCTTTTTCCGAGCTTCGGAGATGGCAACGGACTTGATCATCAGTAACATCCTGCGTATAGGGCGAGTGAATGTTATTGGGGACGTTATTCTGTTTCTTGGGAAGCTATGTGTGAGCCTTGCGAGTGCACTTTTCGCATTCCTCATGTTGGACACTCACAAATACAAATCATCCCACAACAAGATCACATCCCCACTATTTCCTGTGCTGGTGTGTTGGGGTTTGGGATACATAGTGGCTACGTTGTTCTTTGCAGTGGTGGAAATGTCGATCGATACGATCATCCTTTCGTATTGCCAGGATGCAGAGGAACACCAAGGAACTGCACATTATGCTCCCCCACTTTTGATTGAAACCTTTGATGAACAAACTGAGGTGCAAAGAATTGGACAATGA 2103 43.32 MRGPLGSVIGKYPSSDGNGELCGGHGIIKHNRKCRDIVFLVFFIAFWIAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHADFNLQQLELKYWVNPNQVYQSGLKNSQVKLSNARSICLLDCPIPSEDSLNWVCDYPEGDLRLSLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWSCQFIARPSNVSLTHWKQMNGVTIADDMVIDKSIHKLINSRSLVLKRYVADVGKSWPVLIVCGGLLPLFLSLLWLLMIRHFVTGMPWVTVFLFNGLIISVTMFYYMKAGWIGNDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSIAIVRRILMATSVLKVAAKVIGEVQALIIFPVIPYVILAIFYMFWLSAALHLFSSGQVVRNDCNTNCCAYDLKAKRVSCDDCCGYSIRYTSHIAASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGETSTAIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADILPESWIKRMMFYTSRFCLKCIELTIKAVNRNAYIMIAITGKGFFRASEMATDLIISNILRIGRVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVLVCWGLGYIVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDEQTEVQRIGQ 700
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00320 700 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 27 692 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Sain12g00320 700 Pfam Plasma-membrane choline transporter 330 672 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00320 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:5877833 Sain1g01456 Sain-Chr1:99960016 dispersed