AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00322 ATGACTGGAGTGTCATTGGATTCAAGAACACAGAGTTATGGATCGCCACAGCAGCCACAGAATGGTTCATTGCAGACTCAAAACGGTTTCATTGTTCGCAAACCTTCAAGGATGTCGCTATCTGGTTCTAGGGAGAAGGATAAATTTCTTCCTTTTTTATGCAGATATCTAAGTAGAAAGAAGGTTGTAATGCTGATTTTAGGTTCGTTTGCCCTATTGGCTTTCTTGACAGGGTTCTTTACAGTCAATCGAGAAGATGCATCAGAGAGCACGATCTTCGATCAATTTAGTGACGCATATAATACGTCTTTACAGTTCTCCAGAAAATTTGGTAGCCAGCAAGACGATAATTCTTCTATTCAGACAACTCTGGCTGTATGCGAAGAAAACCCACCTACTCGCCATTTTTCTGCTGCATCACTTTCTACAGAATTCGTCTTTTCTCGTAGCAATTTGTGTCAGAATTTTGCATTTCCTCCTCCTCCTCCTCCAGGCGATAGGAGACGGCCTGGACCTCGACCTTGTCCGGTATGTTACCTTCCCGTGGAGCAGGCTATGGCTAGCATGCCGAGATCCCCTTCAACCTCGCCAGTGCTTAATCGCTTAACTTATTTTCATGAGGAGAGTTCGACTAAAACCGAACCACATGAAGGCTCCGACTTTGGTGGGTATCCTTCCCTAAAGCAAAGGAATGAATCTTTTGAAATTAAAGAATCAATGACTGTGCATTGTGGATTTGTAAAAGGGTGCAGACCTGGTTACCGAACTGGATTTGATATCGATGTATCTGATCTTGTGGAATTGGAGCAGTTTCATGATATCATTGTTGCATCCGCCATATTTGGAAACTACGATGTAATTCAACAGCCAACTAAGATTAGTGAGGCTGCAAGTAGAAACATCCCATTCTATATGTTTATTGACGAAGAGACTGAAGCATATATGAGAAACTCTAGTGTTTTGGACTACAAAATGAAGGTTGGATTGTGGAGAATCATTGTTGTGCGTAACATTCCCTATTCCGATTCTAGACGCAACGGAAAGGTTCCAAAGCTTCTGCTACACAGGCTCTTTCCAAATGTTCGGTATTCTATATGGATTGATGGGAAGCTGCAACTTGTTGTGGACCCATATCAAGTTCTTGAGAGGTTCTTGTGGCGCCACAATGCTACTTTTGCTATTTCAAAACATTATAGGCGATTTGATGTGTTCGTAGAAGCTGAAGCTAATAAGGCTGCAGGGAAATACGACAATGCCTCCATTGATTACCAGATTGATTTTTACAGAAACGAAGGTTTAACACCTTATTCTGAGGCCAAGCTTCCTATAATCAGCGATGTTCCTGAAGGGTGCGTTATCATAAGGGAACACATTCCGATAACAAATCTCTTCACATGTTTGTGGTTCAATGAAGTTGATCGGTTTACTTCGAGGGATCAGTTGAGCTTTGCTACTGTACGCGACAAACTCATGGCTCAAGTCAACTGGAGCGTCAACATGTTTCTGGATTGTGAAAGACGCAACTTTGTCATACAGGCGTACCACCGAGATCTATTAGAGCACATGCCACCACCTGCAAGAACAGCGAGTAACTTAAAACGTGGCCGGATTCCTATTCCGGTTCCTGTATCTGTGCGAGTTAATTCATCTGTTAAGAATTCCGCTAAGAAAAACCCTGTTCGACGTGGGAAAGGAGAGAGGAGATCTCGGTCGAGAAGGCACCCGAAAAATCCCAGTAATAGGGACAACACTTTCTTTTTTTGA 1764 42.74 MTGVSLDSRTQSYGSPQQPQNGSLQTQNGFIVRKPSRMSLSGSREKDKFLPFLCRYLSRKKVVMLILGSFALLAFLTGFFTVNREDASESTIFDQFSDAYNTSLQFSRKFGSQQDDNSSIQTTLAVCEENPPTRHFSAASLSTEFVFSRSNLCQNFAFPPPPPPGDRRRPGPRPCPVCYLPVEQAMASMPRSPSTSPVLNRLTYFHEESSTKTEPHEGSDFGGYPSLKQRNESFEIKESMTVHCGFVKGCRPGYRTGFDIDVSDLVELEQFHDIIVASAIFGNYDVIQQPTKISEAASRNIPFYMFIDEETEAYMRNSSVLDYKMKVGLWRIIVVRNIPYSDSRRNGKVPKLLLHRLFPNVRYSIWIDGKLQLVVDPYQVLERFLWRHNATFAISKHYRRFDVFVEAEANKAAGKYDNASIDYQIDFYRNEGLTPYSEAKLPIISDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFATVRDKLMAQVNWSVNMFLDCERRNFVIQAYHRDLLEHMPPPARTASNLKRGRIPIPVPVSVRVNSSVKNSAKKNPVRRGKGERRSRSRRHPKNPSNRDNTFFF 587
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00322 587 PANTHER ALKALINE CERAMIDASE-RELATED 37 548 IPR006852 -
Sain12g00322 587 MobiDBLite consensus disorder prediction 1 28 - -
Sain12g00322 587 Pfam TOD1-MUCI70, glycosyltransferase-like domain 202 515 IPR048354 -
Sain12g00322 587 MobiDBLite consensus disorder prediction 557 575 - -
Sain12g00322 587 MobiDBLite consensus disorder prediction 548 587 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00322 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:5889492 Sain1g01444 Sain-Chr1:99636606 dispersed
Sain Sain-Chr12:5889492 Sain9g02788 Sain-Chr9:169845700 transposed