AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00343 ATGGAGGAAGATTACTCTTTTGATGCTTCGAAGCTGCTTCAAGCAGCTACTGACTTCTCCATTGATCCTGGTACTCGATCAGAAGCGGCTGTGAAGGAATTTCTTGGCTCTTTTCCCCTTCCTCTTATCATCAATGCGCTGCAAACCAGAGGAGACGTGCCTGGTTTGGAGGATGCTCTGATTGATTGTCTAGAGAAGATATTTATAACAAAATATGGGGCCTCCCTCATCCCGCAATACATGCCTTTCATTGTGGTTGGCCTGCAAGCATATTCTCAGAGAGTCAGAACGTTGGCTTGTAAAACGATCTCTAGCCTTTTGAAGAATCTTGAAGATACTGGTTTGGCTACTTCACTGATAAAAGAGAATGGCGCGTATCCACTTTTGCTTAATTGTCTCATTGATGGTGATGAAGAAGTGGCTGTTGCCGCAACAGATGCAATCAGGGATATAGCAGGCTCTCAACAGGGAATCGAAATCATATTCCCAGCTACTCCCAGTGAAACTACAGATATTACAAAGTTAGCAGCTAGATGTTCATCACTGGGACGAGTACGAGTTTTGGCATTGATAGTGAAGCTATTTTCTACTTCGAGTGCAGTAGCATCATTAGTTTACAACTCAAGTCTCCTTAGTCTCTTGGAGACTGAAGTTCGCAATACTAAAGATACACTCATGACCTTGAGCATTTTGGAGCTCCTTTATGAGTTGGCTGAGGTCCAGCATGGAATGGAATATGTGCTAAGGACCAATATCTTGCAGTTACTTATTTCTATAATCAGAAATTCTTCTGCTGAATCGATGTTGAGGTCAAGGGCAATGATGATAACCGGACGGCTTTTAGCGAAGGAGAACGTTCTCATGTTTATAGACGAATCCAGTATTAAAGCTGTGATTTCAGCCATTGATGAAAGGCTTTCATTGCTAGATAATCAAGATGCAGATGAATGTGAATGTGGTCTTGAAGCAATGGGTCAAATAGGGTCATCAACCCAGGGAGCTGTCTTGCTACTGTTAAACACATCTGCTGCTAGACATGTTGTTAGCGCTGCCTTTGATCTGCATGGCCGTGGCAAACAACTGGCTGCCTTGCATTCTCTTGGGACCATTGTAGGAGAAACTCGGCCTGAGAACAACAAATTGCTGAATGCTGATGCCGAAGAGAGCCTGCGTAGATTAATCTATGAAACAGCATCCAACACTCCAAAGCTCATACCCTCGGGTCTTGTTCTTGCCATTCTTAAACTTGAGTCTGAATTTCGGATAGCGAGTTATAGGTTGATAGCAGGATTGGCTGCTAGACCATGGTTCTTAGTCGAGATCTGCTCCAGACAAGAGATAATAAATATAGTGACAGATCCGTATACAGAAACAACCAAAATAGGTATGGAGACCAGATACAACTGTTGTGAGGCAATCTATAAGGCTCTTGCATCATCGTCTAAATTTCTGAATGATCCAGCTCTTTCTGGGACAGCCGAAAAGCTGCTAGAAGCTATTGGAAAGGGTCCTTATCTTGCAAAAGGACGTAAACGTGAAGCTCAACCTGAAGTTGCGACTGCCGACAGATTTTAG 1575 43.3 MEEDYSFDASKLLQAATDFSIDPGTRSEAAVKEFLGSFPLPLIINALQTRGDVPGLEDALIDCLEKIFITKYGASLIPQYMPFIVVGLQAYSQRVRTLACKTISSLLKNLEDTGLATSLIKENGAYPLLLNCLIDGDEEVAVAATDAIRDIAGSQQGIEIIFPATPSETTDITKLAARCSSLGRVRVLALIVKLFSTSSAVASLVYNSSLLSLLETEVRNTKDTLMTLSILELLYELAEVQHGMEYVLRTNILQLLISIIRNSSAESMLRSRAMMITGRLLAKENVLMFIDESSIKAVISAIDERLSLLDNQDADECECGLEAMGQIGSSTQGAVLLLLNTSAARHVVSAAFDLHGRGKQLAALHSLGTIVGETRPENNKLLNADAEESLRRLIYETASNTPKLIPSGLVLAILKLESEFRIASYRLIAGLAARPWFLVEICSRQEIINIVTDPYTETTKIGMETRYNCCEAIYKALASSSKFLNDPALSGTAEKLLEAIGKGPYLAKGRKREAQPEVATADRF 524
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00343 524 SUPERFAMILY ARM repeat 82 481 IPR016024 -
Sain12g00343 524 Pfam Proteasome non-ATPase 26S subunit 75 509 IPR019538 GO:0043248(InterPro)
Sain12g00343 524 Gene3D - 8 403 IPR011989 -
Sain12g00343 524 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED 1 524 IPR019538 GO:0005829(PANTHER)|GO:0043248(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00343 K06692 26S proteasome non-ATPase regulatory subunit 5