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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00348 ATGGCGCAATTGCCGCCAAAAGTGCCAACAATGGCGCAAAATTGGCCCTCATTTCCCTACCAGATGATGTCGTCGATGCCGTCGTCCGCCGCTCAGCCACCAAATTGGGTGGATGAATTCCTTGATTTCTCTTCAGCCAGGAGGAACTCACACAGGAGATCTGTCAGCGATCCAATTGCCTTCATCGAATCGCCTTTCATCCAGGAATGCCGTAATTCTAATGGACCTAATTCGTTGATGCCTTGCTCTAACAACACTGGATTTGAACGCTTGGATGATGAGCAGTTTAGTTCCATGTTTCCCGACGACGTCACGGCGAATAATCTCCCGTCGTCCTCCAATCCGTCTACTCCATCAGATCAAAACAGTGACAATGACGAGCCGAAGCCAACACCGCCACCAGAACAACAACAACAACAACAACAACACCAGCAGCAGCCGAAGAATGAACCTGGAGAAGTAGAAGATGACAGCGGTTGTCAACCTGAGACAGAATCCGCTAAACCTTGCTTCAATTTCTCTAGCGACGGCGGTACAATTGTTGATCCAAAGAGAGTGAAAAGGATTTTAGCAAATCGTCAATCTGCTCAGAGATCACGAGTGAGGAAGTTGCAATACATTTCTGAACTCGAACGCAGTGTTACTACGTTACAGACGGAAGTATCGGCATTGTCTCCACGAGTGGCGTTTTTGGATCATCAAAGGTTGGTTCTAAACGTCGATAATAGCGCGCTTAAGCAACGGATAGCGGCATTGGCTCAAGACAAGATTTTCAAAGACGCTCACCAAGAAGCATTGAAGAAGGAGATAGAGAGGCTGAGGAAAGTGTATCAGGAACAGAACATGCATAAGGCGGAGAACGATGAGGACGAAATCGCCACCGGAAACGACGGTGGATCGGCGGCCGCAAACAGACGTGGTACGGAGGAGAGAGGCGGCAGAATCTGCTAA 951 48.69 MAQLPPKVPTMAQNWPSFPYQMMSSMPSSAAQPPNWVDEFLDFSSARRNSHRRSVSDPIAFIESPFIQECRNSNGPNSLMPCSNNTGFERLDDEQFSSMFPDDVTANNLPSSSNPSTPSDQNSDNDEPKPTPPPEQQQQQQQHQQQPKNEPGEVEDDSGCQPETESAKPCFNFSSDGGTIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLVLNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRKVYQEQNMHKAENDEDEIATGNDGGSAAANRRGTEERGGRIC 316
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00348 316 PANTHER BASIC LEUCINE ZIPPER 34 1 297 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Sain12g00348 316 Pfam bZIP transcription factor 184 229 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sain12g00348 316 SUPERFAMILY Leucine zipper domain 184 238 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sain12g00348 316 MobiDBLite consensus disorder prediction 99 177 - -
Sain12g00348 316 FunFam Basic leucine zipper 61 183 256 - -
Sain12g00348 316 MobiDBLite consensus disorder prediction 282 316 - -
Sain12g00348 316 SMART brlzneu 180 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sain12g00348 316 Gene3D - 183 256 - -
Sain12g00348 316 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 245 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sain12g00348 316 CDD bZIP-plant-RF2 185 235 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sain12g00348 316 Coils Coil 259 283 - -
Sain12g00348 316 MobiDBLite consensus disorder prediction 100 126 - -
Sain12g00348 316 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 187 202 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00348 K20557 transcription factor VIP1
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Event-related genes

Select Gene_1 Gene_2 Event_name
138700 Sain12g00348 Sain13g02420
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:6445495 Sain3g01541 Sain-Chr3:69571753 dispersed
Sain Sain-Chr12:6445495 Sain13g02420 Sain-Chr13:133557859 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g00128 ACH 1 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 51.429 3.49e-115 339.0
Sain1g01336 . 138 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 25.134 4.97e-14 68.2
Sain2g01321 . 34 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 50.0 7.68e-70 217.0
Sain2g01409 . 1 362 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 60.95 3.40e-141 405.0
Sain3g00546 ACH 7 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 51.534 1.64e-47 150.0
Sain3g01164 ACH 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 31.69 2.57e-25 103.0
Sain3g01541 . 1 192 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G42380 30.806 6.63e-17 74.7
Sain3g02798 ACH 6 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.941 5.96e-92 274.0
Sain3g03371 . 23 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 56.608 6.47e-168 481.0
Sain3g03701 . 1 441 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G36270 50.0 8.14e-110 329.0
Sain4g00488 ACH 1 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 41.916 2.12e-33 116.0
Sain4g01733 ACH 1 364 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 52.77 4.99e-106 312.0
Sain4g02740 ACH 1 228 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 64.831 7.79e-107 308.0
Sain4g02942 ACH 1 553 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 56.956 0.0 543.0
Sain4g03249 . 1 308 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 50.299 3.93e-89 268.0
Sain5g00157 . 3 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 39.683 3.83e-74 233.0
Sain5g00860 . 62 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 42.358 1.14e-36 129.0
Sain5g01046 ACH 1 315 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 52.5 2.39e-106 313.0
Sain5g01299 ACH 49 151 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 38.835 3.04e-13 62.4
Sain5g01589 ACH 28 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 60.714 4.54e-49 155.0
Sain6g00636 ACH 6 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 51.818 3.03e-117 346.0
Sain6g00833 . 9 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 46.012 2.83e-41 134.0
Sain6g01857 . 3 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 46.087 3.15e-75 233.0
Sain7g00807 ACH 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 54.028 3.18e-121 357.0
Sain7g01120 . 9 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 51.25 1.10e-44 142.0
Sain8g00305 . 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 55.072 1.58e-15 70.1
Sain8g00556 . 7 315 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 47.188 2.57e-65 206.0
Sain8g00935 ACH 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 56.589 3.97e-119 347.0
Sain8g02444 ACH 40 169 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 60.14 5.27e-48 152.0
Sain8g02681 ACH 5 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 42.949 1.11e-28 102.0
Sain8g02877 ACH 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 56.16 1.76e-116 338.0
Sain8g02956 . 16 115 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G18160 49.0 8.08e-26 94.4
Sain9g03416 ACH 1 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 47.529 2.19e-105 314.0
Sain9g03562 . 1 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 40.0 1.43e-27 100.0
Sain9g04320 ACH 26 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 53.061 4.67e-43 140.0
Sain10g00206 . 121 317 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 26.991 1.66e-16 76.3
Sain10g00281 . 21 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 67.267 7.25e-149 427.0
Sain10g00282 . 21 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 67.267 3.57e-149 427.0
Sain10g00399 . 1 329 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 73.333 2.67e-174 484.0
Sain10g01731 . 1 153 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 71.895 2.18e-56 172.0
Sain10g02675 . 1 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 61.657 0.0 598.0
Sain10g03340 . 1 372 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 63.684 2.16e-154 439.0
Sain10g03437 . 225 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 40.741 5.14e-10 53.5
Sain10g04161 ACH 12 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 50.707 2.99e-142 419.0
Sain10g04241 ACH 1 240 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 56.705 1.59e-93 273.0
Sain10g04817 . 7 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 59.631 1.27e-172 491.0
Sain10g04901 ACH 29 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 52.564 5.84e-42 137.0
Sain10g04903 . 15 151 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G38800 46.715 5.51e-35 118.0
Sain11g00426 ACH 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 54.974 1.30e-112 330.0
Sain11g02131 ACH 24 214 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 36.979 7.33e-30 108.0
Sain11g03535 . 280 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 70.149 2.12e-22 89.0
Sain11g03536 . 22 261 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 69.02 1.04e-108 319.0
Sain11g03725 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 76.133 1.41e-180 500.0
Sain11g03980 . 147 468 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G19490 33.053 8.07e-33 127.0
Sain11g04562 . 60 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 34.177 4.44e-23 90.9
Sain11g04749 . 30 218 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G42990 39.109 2.39e-17 78.6
Sain12g00348 ACH 1 308 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 54.969 4.72e-98 290.0
Sain12g00691 ACH 19 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 52.632 7.01e-44 140.0
Sain12g00843 . 1 431 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G19290 45.354 1.36e-86 268.0
Sain12g01151 . 78 268 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G03970 43.981 3.53e-36 127.0
Sain12g01226 ACH 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 32.234 1.19e-25 103.0
Sain13g01683 ACH 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 32.776 1.88e-26 106.0
Sain13g02051 ACH 1 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 43.839 2.00e-89 273.0
Sain13g02387 ACH 114 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 27.523 5.38e-17 77.8
Sain13g02420 ACH 1 307 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 51.084 8.82e-93 276.0
Sain14g00127 . 27 106 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 47.5 7.19e-18 73.6
Sain14g01005 . 45 335 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 63.158 9.60e-119 349.0
Sain14g01090 . 121 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 27.917 5.03e-18 80.1
Sain14g01569 . 164 218 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G42990 52.727 3.54e-11 57.4
Sain14g01738 . 291 341 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 50.98 5.65e-07 45.8
Sain15g00136 . 11 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.244 2.06e-87 262.0
Sain15g00287 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 65.465 1.55e-149 426.0
Sain15g00352 . 24 720 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 48.128 1.82e-168 499.0
Sain16g00377 . 12 143 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 56.818 1.15e-53 164.0
Sain16g00454 . 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 56.037 4.83e-105 308.0
Sain10000371.1g00001 . 7 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 46.875 4.35e-109 325.0
Sain10000911.1g00001 . 190 295 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 41.509 3.85e-16 75.9
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Sain bZIP_1 8.7e-10 CL0018 TF bZIP