AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00353 | ATGGGTGTTTGTGGGTGGCTGAAGAAGTTAGTCGCCATTAAAAGAAAGAAAGAAACCAGACCCATGAAATTGGAGATACAACAGAATTCCAAGAACACAAATGGAAATGGGCCAAAAGTTCGGGATAATTCTGGGATCGAATCAAGTTTCCGTGCTGGTAGTACCAAAGTTATCGGTCGAAGCACCGGAAAAGAATTTGCTGCCACTCGAATCCAAAATGCGTATCGTTCTTATAGGGCAAGAAAAGCATTACGTTGTCTGAAAGGGACGTCAAGATTTCAGGCGTTGATCGCAGCCGATGCTCTTACGAAGCAAGCGTCTTCTGCTCTTGATAAAATACATTTTTGGAGCAGAATACAAACAGAGATCATAAGCCGCCGCCACTGGATGGCGGCAGAAGGCCGGATAAAACAAAAGAGGCTTGAAAATCAAGTGAAAGTCGAGTCTAAACTTCACGAACTCGAGGTCGAATGGTGTGGTGGGCCCGAGACGATGGAAGAGATCGTGTCCAGGATACAACACCGTGAGGAAGCCACAAACAAACGTGAGCGTGCAATGGCCTACGCCTTCTATCACCAATGGAGGGCGAACCCAAATCGATATTTTGGTCAAGCTTACTATGATCTAAGCAAAGAGAGTTGGGGATGGAGCTGGAAGGAGCGGTGGATCGCGGTGTGCCCATGGGAGGCTCGGGTGGTTGCACGGCCGGTCGGCAAACAAAACAAGGCGTCTAGAACCACAAAGCATGGTGCACCAAAGATAGTGGTTGCGGTGAAAACGCCAACGACTAATGGCAAGGGTATGATTAAAGCAACACATTGA | 822 | 47.69 | MGVCGWLKKLVAIKRKKETRPMKLEIQQNSKNTNGNGPKVRDNSGIESSFRAGSTKVIGRSTGKEFAATRIQNAYRSYRARKALRCLKGTSRFQALIAADALTKQASSALDKIHFWSRIQTEIISRRHWMAAEGRIKQKRLENQVKVESKLHELEVEWCGGPETMEEIVSRIQHREEATNKRERAMAYAFYHQWRANPNRYFGQAYYDLSKESWGWSWKERWIAVCPWEARVVARPVGKQNKASRTTKHGAPKIVVAVKTPTTNGKGMIKATH | 273 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00353 | 273 | ProSiteProfiles | IQ motif profile. | 64 | 92 | - | - | |
| Sain12g00353 | 273 | MobiDBLite | consensus disorder prediction | 25 | 46 | - | - | |
| Sain12g00353 | 273 | PANTHER | IQ-DOMAIN 5-RELATED | 52 | 241 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00353 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 138706 | Sain12g00353 | Sain13g02411 | |
| 138707 | Sain12g00353 | Sain3g00034 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:6577120 | Sain14g02154 | Sain-Chr14:87963813 | dispersed | |
| Sain | Sain-Chr12:6577120 | Sain13g02411 | Sain-Chr13:133270384 | wgd | |
| Sain | Sain-Chr12:6577120 | Sain3g00034 | Sain-Chr3:815994 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Sain1g00046 | . | 11 | 534 | IQD Protein family | AT4G00820 | 52.92 | 2.51e-141 | 416.0 | |
| Sain2g00659 | . | 1 | 392 | IQD Protein family | AT3G22190 | 56.204 | 1.08e-116 | 345.0 | |
| Sain2g01704 | ACH | 1 | 420 | IQD Protein family | AT4G10640 | 33.108 | 5.11e-45 | 157.0 | |
| Sain2g01879 | ACH | 1 | 480 | IQD Protein family | AT4G23060 | 38.416 | 4.58e-57 | 193.0 | |
| Sain3g00034 | ACH | 61 | 224 | IQD Protein family | AT3G15050 | 55.488 | 8.40e-62 | 191.0 | |
| Sain3g00242 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 51.117 | 4.33e-92 | 280.0 | |
| Sain3g00888 | . | 710 | 794 | IQD Protein family | AT1G19870 | 56.522 | 2.58e-22 | 90.9 | |
| Sain3g02424 | ACH | 1 | 332 | IQD Protein family | AT3G16490 | 43.732 | 6.09e-46 | 159.0 | |
| Sain3g04265 | . | 99 | 288 | IQD Protein family | AT4G14750 | 33.168 | 1.44e-16 | 77.8 | |
| Sain4g00981 | . | 1 | 794 | IQD Protein family | AT1G19870 | 36.693 | 4.34e-112 | 359.0 | |
| Sain4g01413 | ACH | 107 | 451 | IQD Protein family | AT5G03040 | 44.652 | 6.88e-79 | 253.0 | |
| Sain4g01961 | ACH | 108 | 360 | IQD Protein family | AT5G07240 | 39.867 | 2.22e-38 | 139.0 | |
| Sain5g00376 | . | 1 | 290 | IQD Protein family | AT4G14750 | 32.722 | 1.37e-31 | 120.0 | |
| Sain5g00802 | . | 29 | 100 | IQD Protein family | AT3G51380 | 72.222 | 6.72e-29 | 100.0 | |
| Sain5g01731 | ACH | 1 | 575 | IQD Protein family | AT1G74690 | 40.034 | 6.75e-87 | 277.0 | |
| Sain6g01374 | . | 94 | 135 | IQD Protein family | AT3G52290 | 69.048 | 1.29e-12 | 60.5 | |
| Sain7g02090 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 53.5 | 1.72e-105 | 315.0 | |
| Sain7g02162 | . | 1 | 414 | IQD Protein family | AT1G72670 | 42.257 | 7.17e-87 | 268.0 | |
| Sain8g01257 | ACH | 72 | 280 | IQD Protein family | AT5G03040 | 49.77 | 7.55e-61 | 204.0 | |
| Sain8g02293 | ACH | 1 | 575 | IQD Protein family | AT1G74690 | 38.435 | 1.77e-77 | 253.0 | |
| Sain9g02884 | . | 1 | 236 | IQD Protein family | AT3G15050 | 47.984 | 3.33e-65 | 203.0 | |
| Sain9g03559 | . | 1 | 443 | IQD Protein family | AT5G13460 | 44.42 | 3.06e-98 | 298.0 | |
| Sain10g00995 | . | 1 | 386 | IQD Protein family | AT2G26180 | 59.662 | 1.71e-143 | 414.0 | |
| Sain10g01327 | ACH | 1 | 480 | IQD Protein family | AT4G23060 | 39.922 | 8.09e-61 | 204.0 | |
| Sain10g01984 | ACH | 1 | 450 | IQD Protein family | AT5G03040 | 47.186 | 2.46e-114 | 341.0 | |
| Sain10g02187 | ACH | 1 | 517 | IQD Protein family | AT3G59690 | 39.889 | 1.40e-89 | 279.0 | |
| Sain10g03163 | ACH | 11 | 534 | IQD Protein family | AT4G00820 | 44.524 | 4.86e-123 | 369.0 | |
| Sain11g00042 | . | 37 | 376 | IQD Protein family | AT4G10640 | 29.201 | 6.22e-32 | 122.0 | |
| Sain11g00195 | ACH | 7 | 343 | IQD Protein family | AT5G07240 | 43.902 | 2.06e-43 | 152.0 | |
| Sain11g00848 | ACH | 1 | 423 | IQD Protein family | AT3G52290 | 52.954 | 1.30e-118 | 351.0 | |
| Sain11g01215 | ACH | 1 | 458 | IQD Protein family | AT5G03040 | 53.488 | 7.50e-147 | 425.0 | |
| Sain11g01791 | ACH | 1 | 575 | IQD Protein family | AT1G74690 | 40.333 | 2.12e-89 | 285.0 | |
| Sain11g04304 | . | 137 | 793 | IQD Protein family | AT1G19870 | 36.261 | 7.78e-91 | 298.0 | |
| Sain12g00353 | ACH | 37 | 240 | IQD Protein family | AT3G15050 | 53.738 | 1.79e-72 | 221.0 | |
| Sain12g00590 | . | 1 | 388 | IQD Protein family | AT5G35670 | 44.226 | 3.28e-77 | 243.0 | |
| Sain13g00458 | . | 1 | 378 | IQD Protein family | AT4G14750 | 44.638 | 3.53e-79 | 246.0 | |
| Sain13g02411 | ACH | 48 | 241 | IQD Protein family | AT3G15050 | 49.231 | 3.59e-56 | 181.0 | |
| Sain14g00376 | ACH | 1 | 450 | IQD Protein family | AT5G03040 | 51.957 | 5.02e-140 | 407.0 | |
| Sain14g00961 | ACH | 1 | 517 | IQD Protein family | AT3G59690 | 48.496 | 5.16e-149 | 435.0 | |
| Sain14g01724 | . | 1 | 469 | IQD Protein family | AT3G49260 | 45.968 | 7.96e-104 | 315.0 | |
| Sain14g02154 | . | 1 | 237 | IQD Protein family | AT3G15050 | 48.347 | 1.04e-66 | 206.0 | |
| Sain16g00066 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 46.883 | 3.32e-60 | 197.0 | |
| Sain16g01337 | . | 1 | 374 | IQD Protein family | AT4G14750 | 50.636 | 1.01e-92 | 281.0 |