AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00356 ATGCTCTGTCTACCTCTCCGCTCTATATCTCCTCACCCCAAAATTCCTGTTGGATCCCAAACCCAAGCGTTCAGATTCTTGTCAACAACCCATTTTGTTCATCTTCATCAGCGTCGTAAATATTCAAACAATATTGTTCACAGGAGTTATGAGTATAGTTCTTGTCCTTGTTCGAATTCGGACACGGGTTCTTTCAATTCGAGCGAAGAAGAATTCGATATGGAATTGGGACGCTTGTTGAGGCTGTTGCCGGAGGAGATGCGGCGGAGGGTTAACGAACATCAAGAACTTCACCAACTGATTGAGGTCGTTATGGATTTGGGTCGGAAACCCTTGGCTCGATTTCCTTCTGGAGATTTCGTCTTGTCGGATCATTTGATCACGGTGGATGATCTTTTACACGCTACTTCATTGGTAGGTGATTTTGCTATTGACAATCGGGCTGGCATTAGCAGAACTTTGCACCGAATTAGTGCCATCAGAAACCGCAAGGCCGCAATTATTGGGCTAACCTGTCGTGTTGGCCGAGCTGTATCAGGAAGTGCCAAATTATTGCAAGATTTGGTTAAAGATGGATCCTCTTTATTGCTTATTGGACCTCCAGGAGTTGGAAAAACTACAATTATCAGGGACATAGCTCGAATGCTTGCAAATGACTATAAGAAACGTGTCATGATTGTTGACACCTCAAATGAAATCGGTGGAGACGGTGATATACCTCACGCAGGTATAGGTAATGCTCGACGGATGCAAGTTCCTGATTCTGATATGCAACATAAGGTGTTAATAGAAGCAGTCGAAAATCATATGCCTCAAGTGATTGTAATTGATGAAATCGGCACAAAACTTGAAGCAGCAGCTGCAAGCACTATTGCACAACGTGGGATTCAGTTAGTTGCAACTGCTCATGGTATTACAATAGAGAATTTAGTGATGAATCCTTCGTTAGAGATGCTTGTTGGAGGAATACAAAGTGTGACACTAGGAGATGAAGAGGCAAATCGAAGGGGTGTACAGAAATCAGTGCTGGAGAGAAAAGGTCCATCTACTTTTGATTGTGCGGTGGAGATCATTTCTAGGGTTGAGTTGAGAGTTCATAGTAGCCTCGAAGCAACAGTTGATGCTATTCTTTCTGGCCGTTCCCCGAAATATCAAGTTTGCAAGTTAAATCAGGGAGAGGTAGATGTTACTCTACAAAATGACCCAAGGGCACACGAGTCATTTGTCAAGAAGAGCGTTACCACAATTGAAGGCATCCCACATTGGACTGATGAAAAGCTTATATCTGATAAACACATTTCTAAAGAGTCGCAAAGTGACGAAGAGAATTCTTACGATAAGCCACCCTTGTGTTTATTTCTCTATGGGGTATCAGAGACATGTGCGATACAAGTATTCAAAAATTTAAAGATGGACTCTGCTATTGAATTTACGGAGAATATTAGTGAAGCAGATGCAATACTTGCACTACTGTCCAAAATAAGGAAAAATTCTCGGATTCAGGCTGCTGCTCACTCTAATGACATACCTATTTATGTGACAAAGACAAGCTCGTTGACGCAGTTAACAAAGGCCATAGAGGCATTAGTGACCGATTATGATAATGGTTTTGAAGATAATGAAGATGAAACTCAGATAAATGAATCAGAAAAGACTGATGCTTTGGAGGAGGTGAGAATTGCTATTGAGCAGGTTGTAATCCCAAAAGGGCAACCTGTAGAATTACTTCCTAGGCCATCCAGCATTATGTTGCTTCAGAAAGATCTCATTCGTAAATACAAGCTACAAGCACAGCAAATTGGTTCAGAGGTAGATGTAAGGCTTCGTATCCTACCATTTCAAGGTAACAAACAAGATAAAGATCCTGGTGAAACAAGTGATGACCATGATGATGATGATGGTGAAATTAGTGAGTTATCTGAAACAAATGGTTCAGCCTACCCAATGGATAGGTTGCCTTTCTTGCCTGACTAA 1974 41.59 MLCLPLRSISPHPKIPVGSQTQAFRFLSTTHFVHLHQRRKYSNNIVHRSYEYSSCPCSNSDTGSFNSSEEEFDMELGRLLRLLPEEMRRRVNEHQELHQLIEVVMDLGRKPLARFPSGDFVLSDHLITVDDLLHATSLVGDFAIDNRAGISRTLHRISAIRNRKAAIIGLTCRVGRAVSGSAKLLQDLVKDGSSLLLIGPPGVGKTTIIRDIARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPDSDMQHKVLIEAVENHMPQVIVIDEIGTKLEAAAASTIAQRGIQLVATAHGITIENLVMNPSLEMLVGGIQSVTLGDEEANRRGVQKSVLERKGPSTFDCAVEIISRVELRVHSSLEATVDAILSGRSPKYQVCKLNQGEVDVTLQNDPRAHESFVKKSVTTIEGIPHWTDEKLISDKHISKESQSDEENSYDKPPLCLFLYGVSETCAIQVFKNLKMDSAIEFTENISEADAILALLSKIRKNSRIQAAAHSNDIPIYVTKTSSLTQLTKAIEALVTDYDNGFEDNEDETQINESEKTDALEEVRIAIEQVVIPKGQPVELLPRPSSIMLLQKDLIRKYKLQAQQIGSEVDVRLRILPFQGNKQDKDPGETSDDHDDDDGEISELSETNGSAYPMDRLPFLPD 657
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00356 657 PANTHER KINASE-RELATED 57 575 - GO:0009507(PANTHER)
Sain12g00356 657 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 600 619 - -
Sain12g00356 657 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 199 218 - -
Sain12g00356 657 FunFam uncharacterized protein ycf45 isoform X2 156 373 - -
Sain12g00356 657 Gene3D - 172 336 IPR027417 -
Sain12g00356 657 Pfam Sporulation stage III, protein AA 167 321 IPR045735 -
Sain12g00356 657 CDD R3H-AAA 553 612 IPR034081 -
Sain12g00356 657 SMART AAA-5 191 322 IPR003593 GO:0016887(InterPro)
Sain12g00356 657 CDD AAA 192 281 - -
Sain12g00356 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 334 IPR027417 -
Sain12g00356 657 MobiDBLite consensus disorder prediction 614 657 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00356 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:6632060 Sain8g01374 Sain-Chr8:53651504 dispersed