AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00358 ATGGCTTCAGGGATATTAGATGCGGACAAGATAAGCAAAGGGAGGAGTAAGTGGGGAGAGGGTAATAAAGTCTACACACGAAGGTTTAAAAAAACCAACAAGAACACCACCGCCACCACCGCTTCTTCCCCAACCACCACCGTCACCACCACTTCTCCGCCTACTACCGCCACCGCCACCGCCGCTTCTCCACCCGCCACCACAAACAACGAGCAAACCCTAGCCACCGACGACGCAAATTCGGAAAGGCAACAACAGACTTTATCGCCGGTACAAGAGGTATCGGTATCAGATGATCACTCCATTCAAAATCGGCAGCTTGAAGCGGTTGCTGTTTCTCGAAACGGAGTAATAAAACCGGTTGCAGTTTTGGTGGACGATCGGGTCAAGATTAATATAAAAGCTGCAAGGTCTAAGAATGAGATTGTTGAGCTTAGAGAGAAGCTAAGAGCTGAGCTTGATCGAGTTCGGCGTTTAGCTCAAAAGCTTGAAGATAAAGAAGCTGAGCTGACTCAATTTTCAACAGTCGTTGGGGTTGCTGGTGATGGAGACGCTTACAGTCATTCACAGTATTCAGGTAATGATATAGTGGAGAGGAGAGCTCTGCTTAGAGTGAATTCCGAAATGGGTACTGATTTCATGGATCGTAGGGCTTTAGCAAGAGTTGATCGCGAAATGGGGTCTGATGTGATCGACCGTAGAGCCTTAATGAGACTAAATTCTGAAGTTGGTTCAGTGGCTATTTCAAATAGCGATATAAGGCCTTTTAGGCCACTAAGTGTATCAGTTGTTGATAACAATCATGGGGTTAGTGAGTTTGTTGAGAAAGAGAAGAGGACACCGAAGGCGAATCAGTATTATCGGAATTCTGATTTTCTTCTCGGAAAAGACAGATTACCTCCTGAGAGCAACAAGCGGCATAAAGTCAACGGTGGACGAAAGCATAGCAAGGAATCGGATTACAGTATTGGTCACGAAAGACACAGGAATCAAATGTTCAAGAGTTGCAACAATTTGCTGCAGAGATTGATGAAGCATAAGCATGGTTGGGTGTTTAACGAACCTGTTAACGCGAAACTTCTTGGGCTGCACGATTACCATGACATCATCAAACACCCAATGGATTTGGGCACGATTAAGAGTCGTCTTGCCCAAAACTTCTACAAGTCGCCACGAGAGTTTGCGGATGATGTCAGACTCACGTTTCATAACGCCATGACTTATAATCCAAAAGGGCAAGATGTACATGTTATGGCAGAGCAGCTTTCGAATATTTTCGAAGAGAGGTGGCCAGTGATTGAATTGGAATACAATCAAGATTGGAGATACGGAATGATTTACGATGCAAGCACTCCAACTCCCACTTCAAGAAAAGTTCCTCATTTCGCACACGCCCCTCCAAGAACGCTGTATCGGTCGGAATCCATGACTTTGCCTTTCATGACTAGGCAAAAACCCTCGAAGTTCGCCCCACCTAGTAGGACACCTTTGCCGAAGAAACCTAAAGCGAAAGATCCCAATAAGAGGAATATGACTTACGAAGAGAAGCAAAAACTTAGCACAAATCTTCAAAGCCTACCTTCTGAAAAGCTTGATAATATTGTCCAGATCATCAAAAAGAAGAACACCTCTCTTTCTCAACATGACGATGAAATCGAAGTTGATATTGATAGTGTTGATATAGAAACTCTGTGGGAACTCGATAGGTTTGTTACAAATTACAAGAAGAGTTTAAGCAAGCATAAAAGGAAAGCTGAACTTGCTCAGCAAGCAAGGGTGGGAGCTGGCAATGCTAATCAGACTGTGTTACAAAACCTTGCAACATCCATTCCACAGGCCCCAAAAGAAAATAAAGCAGATGAGAAGAATCTTGCGAGTACTCCTCCCGACCAGGGAGATAATGGCAATAGGTCTAGTAGTTCAAGCAGTTCTAGCAGTGACTCGGGATCCTCTTCAAGCGATTCAGATAGTGATAGTTCCTCTGAAGATGGATCAGATGCAGGTCATTCACCTAGAAGTTGA 2022 44.36 MASGILDADKISKGRSKWGEGNKVYTRRFKKTNKNTTATTASSPTTTVTTTSPPTTATATAASPPATTNNEQTLATDDANSERQQQTLSPVQEVSVSDDHSIQNRQLEAVAVSRNGVIKPVAVLVDDRVKINIKAARSKNEIVELREKLRAELDRVRRLAQKLEDKEAELTQFSTVVGVAGDGDAYSHSQYSGNDIVERRALLRVNSEMGTDFMDRRALARVDREMGSDVIDRRALMRLNSEVGSVAISNSDIRPFRPLSVSVVDNNHGVSEFVEKEKRTPKANQYYRNSDFLLGKDRLPPESNKRHKVNGGRKHSKESDYSIGHERHRNQMFKSCNNLLQRLMKHKHGWVFNEPVNAKLLGLHDYHDIIKHPMDLGTIKSRLAQNFYKSPREFADDVRLTFHNAMTYNPKGQDVHVMAEQLSNIFEERWPVIELEYNQDWRYGMIYDASTPTPTSRKVPHFAHAPPRTLYRSESMTLPFMTRQKPSKFAPPSRTPLPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDNIVQIIKKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKSLSKHKRKAELAQQARVGAGNANQTVLQNLATSIPQAPKENKADEKNLASTPPDQGDNGNRSSSSSSSSSDSGSSSSDSDSDSSSEDGSDAGHSPRS 673
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00358 673 MobiDBLite consensus disorder prediction 483 510 - -
Sain12g00358 673 Coils Coil 128 176 - -
Sain12g00358 673 PANTHER OSJNBA0053K19.4 PROTEIN 23 665 - -
Sain12g00358 673 MobiDBLite consensus disorder prediction 1 100 - -
Sain12g00358 673 MobiDBLite consensus disorder prediction 612 673 - -
Sain12g00358 673 CDD Bromo-plant1 332 430 IPR037377 -
Sain12g00358 673 MobiDBLite consensus disorder prediction 627 658 - -
Sain12g00358 673 Gene3D - 312 441 IPR036427 GO:0005515(InterPro)
Sain12g00358 673 SMART bromo-6 325 435 IPR001487 GO:0005515(InterPro)
Sain12g00358 673 ProSiteProfiles Bromodomain profile. 344 416 IPR001487 GO:0005515(InterPro)
Sain12g00358 673 ProSiteProfiles NET domain profile. 501 582 IPR027353 -
Sain12g00358 673 Gene3D - 504 584 IPR038336 -
Sain12g00358 673 MobiDBLite consensus disorder prediction 31 100 - -
Sain12g00358 673 MobiDBLite consensus disorder prediction 298 326 - -
Sain12g00358 673 Pfam Bromodomain 336 420 IPR001487 GO:0005515(InterPro)
Sain12g00358 673 PRINTS Bromodomain signature 379 397 IPR001487 GO:0005515(InterPro)
Sain12g00358 673 PRINTS Bromodomain signature 397 416 IPR001487 GO:0005515(InterPro)
Sain12g00358 673 PRINTS Bromodomain signature 347 360 IPR001487 GO:0005515(InterPro)
Sain12g00358 673 PRINTS Bromodomain signature 363 379 IPR001487 GO:0005515(InterPro)
Sain12g00358 673 MobiDBLite consensus disorder prediction 10 27 - -
Sain12g00358 673 MobiDBLite consensus disorder prediction 296 326 - -
Sain12g00358 673 Pfam Bromodomain extra-terminal - transcription regulation 511 572 IPR027353 -
Sain12g00358 673 SUPERFAMILY Bromodomain 322 440 IPR036427 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00358 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138708 Sain12g00358 Sain13g02410
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:6755780 Sain13g01923 Sain-Chr13:119749179 dispersed
Sain Sain-Chr9:201531624 Sain12g00358 Sain-Chr12:6755780 transposed
Sain Sain-Chr12:6755780 Sain13g02410 Sain-Chr13:133261744 wgd