AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00362 | ATGAAGGGTGATTGTATCAAATCCCTAAAGATGTTGTTGATCTACGATATCGATAATTTTCATGACGATGGTTTCGAGGGTTCGATGGATGATGACCGCATTTTTAGAGAGGTGTTCTTTGGACATGAAAATGGTAGAAGTAGTAAAAGGTGTCAAAATGACAAAAAGATCCCCAAAAATGTCTCATTTTGTTCAGACAGTGACAATTCAGTCATGACAATTCAGAGCAGCAGCTCCGAAGAATTTCCTTTTTTGACAAGAAATGGTCCCGATGTTGAAGTTAAGCGAAGGAAGGTGTCGTTTCTAGAACATTCCAAATCTAAATCTTATCTAGAAACCGTAGTTAAGTCTTCAAATGATCAGAAGGTTCTAGTAGCTACGCCGAAACCAGTTCAATGTTCCAAGCCAAGATGGAAAGATTCTTCCTTCATTGAACTCAATAAAGACGAATTATCGGTTCCCCTTAAAGATTCCACCGTGGATCCTAAACCCCTTTTGCGTTACCACACGTATTGCTTACTCAGATCAGCAGGGTGGGTAATCGGGAGGCGTAATAGAATCACAAATTGTAAAGGGCGTGGGGAGTACGTTTTCAAATCTCCTGAAGGAAGGCCAATTCGTGAGTTTCATAGAGCTTGGACCATGTGTGGGAAAAGGTTAGTCGAAGACGCAAAATATATTGATTTCTGTGATGGCATACGGTGGACCGAGTTGACTCGGTTTTGCTCTGATCTTTCTAACGCGTTGACAGAGGTTGAAGGACTGAGAAATTCAGAAGCTGCAACTGCGTTAGCTCGTCGGTGGTACTTGCTTGATCCTTTTGCGAAAGTGGTGTTTGTTGATAAGAGACTTTCGTGGCTGAAAGAAGGGAAAGAAGTGAAAGCAGAGAGAAGTGTGACGAATAGTTTATATGAAAAGAAGAAAAAAGGGAATTCCCGTGTTCCGAAAGTTGTTAGGAAGAACAAGAGCCAAAAAGGCGGTTGCAGGTTGCTTCCACGGAGTTTTGCAAAGGGAAATGGTGTAAGAACTGTATTGACTTTGTTGATTGATCTTGGTGTGATTCATCTCAACGAAGTAATCCAATATAGGAACCCGAAGGATGATTCAGTGGTGAAGGATGGCCGTGTAACCCGAGAAGGTATTTTGTGTCGGTGTTGTAAGAAGGTGCTTTCTGTCTCTGAGTTCAAGAATCATTCCGGTTTTGGAATGAATCGTCCATGTTTGAATCTTTTTATGGGATCTGGAAAATCATTGACCTTATGCCAACTTGAAGCTTGGTCAACTGAATATAAGGTCAGGAAAAGTGGCATACGAACTGTACACGATGAGGAGATTGACCAAAGTGATGATAGTTGTGGACTTTGTGGCGATGGAGGTGAGTTGATATGCTGTGATAATTGTCCCTCAACCTTTCATCAGGCATGCTTGTATACACAGGAGCTACCTGAAGGCAATTGGTATTGTTCAATGTGCTGTTGCTGTAGTTGCGGGAATGTAGCCAATCATATTGAGACTTCGGTCTCTAAAGCTCTAAAATGTTTGCAGTGCGAACGCAAATATCATGAGGAATGCATCAAAGAGAACGGGATTGAGAGAGAATCGGTGGCTTCTAACTGGTTCTGTGGAGAGACCTGTAAGAAGATTCACTCAGGTCTTCAGTCCCAGATTGGACGTCTGAATCCCATCTCCGATGGTTTCTCGTGGACCGTTTTGAGGTGTTTTCATGGTGACGAAAAGGTTCATTCTGGTCTGAAGGCGGAATGCAATCTAAAACTAGCTGTTGCCCTTACAATCATGGAGGAGTGTTTTGTTCCGATGGTGGATACAAGGACAGGCATCCATATGATACCACATGTATTGTACAATTGTGGATCAGAATTCGTCCGTCTCAACTACGAGGGATTCTACACTGTGGTTCTGGAGAAAGATGACATATTGCTCTGTGCGGCATCCATAAGGATCCATGGGGCAACGGTTGCAGAATTGCCCCTCATCGCGACATGCAGCAGATATAGGCGCCAAGGAATGTGTAGGCGCCTCATGAGTGCTATTGAAGAGATGCTCAAGTCTTTCAAAATTGAGAAGCTGGTGGTGTCTGCCATCCCGAGCGTTGTTGAGACATGGACAGAGGGGTTTGGTTTCTCGCCATTGGAAGCCGATGAAAAAAAGAGCTTGGACAAAACCAATCTCATGGTGTTCCCAGGAACAGTATGGCTCAAGAAGCCCATGTACCATGGGTGA | 2241 | 43.51 | MKGDCIKSLKMLLIYDIDNFHDDGFEGSMDDDRIFREVFFGHENGRSSKRCQNDKKIPKNVSFCSDSDNSVMTIQSSSSEEFPFLTRNGPDVEVKRRKVSFLEHSKSKSYLETVVKSSNDQKVLVATPKPVQCSKPRWKDSSFIELNKDELSVPLKDSTVDPKPLLRYHTYCLLRSAGWVIGRRNRITNCKGRGEYVFKSPEGRPIREFHRAWTMCGKRLVEDAKYIDFCDGIRWTELTRFCSDLSNALTEVEGLRNSEAATALARRWYLLDPFAKVVFVDKRLSWLKEGKEVKAERSVTNSLYEKKKKGNSRVPKVVRKNKSQKGGCRLLPRSFAKGNGVRTVLTLLIDLGVIHLNEVIQYRNPKDDSVVKDGRVTREGILCRCCKKVLSVSEFKNHSGFGMNRPCLNLFMGSGKSLTLCQLEAWSTEYKVRKSGIRTVHDEEIDQSDDSCGLCGDGGELICCDNCPSTFHQACLYTQELPEGNWYCSMCCCCSCGNVANHIETSVSKALKCLQCERKYHEECIKENGIERESVASNWFCGETCKKIHSGLQSQIGRLNPISDGFSWTVLRCFHGDEKVHSGLKAECNLKLAVALTIMEECFVPMVDTRTGIHMIPHVLYNCGSEFVRLNYEGFYTVVLEKDDILLCAASIRIHGATVAELPLIATCSRYRRQGMCRRLMSAIEEMLKSFKIEKLVVSAIPSVVETWTEGFGFSPLEADEKKSLDKTNLMVFPGTVWLKKPMYHG | 746 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00362 | 746 | SMART | PHD-3 | 493 | 546 | IPR001965 | - | |
| Sain12g00362 | 746 | SMART | PHD-3 | 451 | 492 | IPR001965 | - | |
| Sain12g00362 | 746 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 633 | 717 | IPR016181 | - | |
| Sain12g00362 | 746 | CDD | NAT-SF | 638 | 699 | - | - | |
| Sain12g00362 | 746 | Pfam | PHD-finger | 452 | 491 | IPR019787 | - | |
| Sain12g00362 | 746 | ProSiteProfiles | Zinc finger PHD-type profile. | 449 | 494 | IPR019787 | - | |
| Sain12g00362 | 746 | Gene3D | - | 614 | 732 | - | - | |
| Sain12g00362 | 746 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 594 | 744 | IPR000182 | GO:0016747(InterPro) | |
| Sain12g00362 | 746 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 437 | 511 | IPR013083 | - | |
| Sain12g00362 | 746 | PANTHER | PHD FINGER PROTEIN 12 | 87 | 744 | - | GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER) | |
| Sain12g00362 | 746 | SUPERFAMILY | FYVE-PHD zinc finger | 432 | 491 | IPR011011 | - | |
| Sain12g00362 | 746 | Pfam | Tify domain binding domain | 374 | 424 | IPR032308 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00362 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 138710 | Sain12g00362 | Sain13g02404 | |
| 138711 | Sain12g00362 | Sain3g00020 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:6853623 | Sain3g01306 | Sain-Chr3:56359924 | dispersed | |
| Sain | Sain-Chr12:6853623 | Sain13g02404 | Sain-Chr13:133192257 | wgd | |
| Sain | Sain-Chr12:6853623 | Sain3g00020 | Sain-Chr3:549385 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Sain2g00506 | . | 68 | 663 | PHD Transcription Factor family | AT5G22260 | 31.04 | 8.90e-83 | 273.0 | |
| Sain3g00020 | ACH | 7 | 1025 | PHD Transcription Factor family | AT3G14980 | 43.08 | 0.0 | 786.0 | |
| Sain3g01306 | . | 13 | 984 | PHD Transcription Factor family | AT4G14920 | 44.995 | 0.0 | 796.0 | |
| Sain3g02401 | ACH | 7 | 597 | PHD Transcription Factor family | AT3G24440 | 46.613 | 1.75e-172 | 501.0 | |
| Sain3g02407 | . | 7 | 597 | PHD Transcription Factor family | AT3G24440 | 46.935 | 6.46e-173 | 503.0 | |
| Sain3g03633 | . | 172 | 301 | PHD Transcription Factor family | AT3G53680 | 53.846 | 2.17e-39 | 149.0 | |
| Sain3g04393 | . | 312 | 939 | PHD Transcription Factor family | AT1G05380 | 47.799 | 0.0 | 585.0 | |
| Sain4g00848 | . | 15 | 672 | PHD Transcription Factor family | AT5G22260 | 49.85 | 0.0 | 637.0 | |
| Sain4g01596 | . | 1545 | 1704 | PHD Transcription Factor family | AT5G35210 | 37.5 | 3.06e-22 | 100.0 | |
| Sain4g02981 | ACH | 685 | 760 | PHD Transcription Factor family | AT4G14920 | 37.037 | 3.94e-07 | 53.1 | |
| Sain4g03288 | . | 29 | 164 | PHD Transcription Factor family | AT5G58610 | 29.167 | 7.59e-08 | 49.3 | |
| Sain5g00929 | ACH | 684 | 760 | PHD Transcription Factor family | AT4G14920 | 35.366 | 4.05e-07 | 52.8 | |
| Sain8g01606 | . | 36 | 464 | PHD Transcription Factor family | AT5G57380 | 37.367 | 1.95e-92 | 293.0 | |
| Sain8g02981 | ACH | 650 | 719 | PHD Transcription Factor family | AT5G36670 | 42.667 | 4.78e-07 | 52.8 | |
| Sain8g03164 | . | 15 | 667 | PHD Transcription Factor family | AT5G22260 | 34.125 | 5.17e-117 | 362.0 | |
| Sain9g00080 | ACH | 29 | 160 | PHD Transcription Factor family | AT5G58610 | 31.343 | 5.73e-11 | 63.9 | |
| Sain9g00094 | ACH | 718 | 801 | PHD Transcription Factor family | AT3G14980 | 30.556 | 3.02e-06 | 50.1 | |
| Sain9g02391 | ACH | 130 | 217 | PHD Transcription Factor family | AT5G57380 | 31.068 | 1.74e-09 | 58.5 | |
| Sain9g03498 | . | 130 | 215 | PHD Transcription Factor family | AT5G57380 | 30.392 | 1.90e-09 | 60.1 | |
| Sain9g04265 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 28.671 | 2.40e-06 | 48.9 | |
| Sain10g00423 | . | 1 | 1593 | PHD Transcription Factor family | AT5G12400 | 38.221 | 0.0 | 1017.0 | |
| Sain10g00862 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 28.986 | 5.38e-09 | 58.5 | |
| Sain10g00863 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 28.261 | 3.82e-09 | 55.8 | |
| Sain10g01131 | . | 615 | 661 | PHD Transcription Factor family | AT5G22260 | 44.681 | 1.94e-06 | 50.1 | |
| Sain10g02035 | . | 1542 | 1706 | PHD Transcription Factor family | AT5G35210 | 86.667 | 1.40e-87 | 295.0 | |
| Sain10g02592 | . | 253 | 974 | PHD Transcription Factor family | AT2G36720 | 47.226 | 0.0 | 662.0 | |
| Sain10g04153 | ACH | 685 | 753 | PHD Transcription Factor family | AT4G14920 | 39.189 | 1.56e-07 | 54.3 | |
| Sain10g05022 | ACH | 130 | 264 | PHD Transcription Factor family | AT5G57380 | 26.144 | 5.84e-10 | 60.8 | |
| Sain10g05113 | . | 26 | 160 | PHD Transcription Factor family | AT5G58610 | 28.966 | 9.85e-07 | 49.7 | |
| Sain11g01298 | ACH | 41 | 831 | PHD Transcription Factor family | AT3G53680 | 53.415 | 0.0 | 847.0 | |
| Sain11g02340 | ACH | 681 | 760 | PHD Transcription Factor family | AT4G14920 | 35.294 | 7.60e-08 | 55.5 | |
| Sain11g02481 | . | 27 | 174 | PHD Transcription Factor family | AT5G58610 | 29.054 | 6.36e-11 | 58.2 | |
| Sain11g04296 | . | 361 | 413 | PHD Transcription Factor family | AT5G22260 | 48.148 | 3.36e-08 | 47.0 | |
| Sain12g00362 | ACH | 574 | 1025 | PHD Transcription Factor family | AT3G14980 | 58.15 | 0.0 | 553.0 | |
| Sain12g00489 | ACH | 610 | 656 | PHD Transcription Factor family | AT5G12400 | 36.735 | 2.77e-06 | 47.8 | |
| Sain12g01343 | . | 695 | 736 | PHD Transcription Factor family | AT5G58610 | 45.652 | 9.64e-08 | 53.9 | |
| Sain13g00883 | ACH | 1 | 685 | PHD Transcription Factor family | AT4G30200 | 45.845 | 1.56e-180 | 528.0 | |
| Sain13g01124 | . | 216 | 984 | PHD Transcription Factor family | AT4G14920 | 48.005 | 0.0 | 714.0 | |
| Sain13g01940 | . | 1546 | 1704 | PHD Transcription Factor family | AT5G35210 | 28.655 | 1.73e-12 | 68.9 | |
| Sain13g02404 | ACH | 470 | 1034 | PHD Transcription Factor family | AT3G14980 | 53.033 | 0.0 | 601.0 | |
| Sain13g02641 | ACH | 29 | 160 | PHD Transcription Factor family | AT5G58610 | 29.104 | 3.63e-10 | 60.8 | |
| Sain14g00286 | . | 190 | 977 | PHD Transcription Factor family | AT2G36720 | 44.866 | 0.0 | 662.0 | |
| Sain14g00288 | . | 515 | 977 | PHD Transcription Factor family | AT2G36720 | 54.721 | 0.0 | 550.0 | |
| Sain14g00404 | ACH | 161 | 300 | PHD Transcription Factor family | AT3G53680 | 52.143 | 3.07e-40 | 155.0 | |
| Sain14g02482 | ACH | 130 | 272 | PHD Transcription Factor family | AT5G57380 | 28.221 | 7.24e-08 | 53.5 | |
| Sain15g00525 | . | 365 | 973 | PHD Transcription Factor family | AT5G58610 | 33.485 | 1.05e-99 | 326.0 | |
| Sain15g00989 | . | 528 | 1062 | PHD Transcription Factor family | AT5G58610 | 40.034 | 3.46e-127 | 414.0 | |
| Sain16g00944 | . | 553 | 1028 | PHD Transcription Factor family | AT5G58610 | 46.562 | 7.37e-134 | 432.0 | |
| Sain16g01073 | ACH | 3 | 685 | PHD Transcription Factor family | AT4G30200 | 43.266 | 2.36e-165 | 486.0 | |
| Sain16g01566 | ACH | 5 | 597 | PHD Transcription Factor family | AT3G24440 | 47.43 | 2.70e-174 | 505.0 |