AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00366 ATGGCGGATGAAAAAGAGGTAAAGGAAGTGGTTGAAGAGAAGAATGATAAAAAGAGTAAGAACAAGAAGGGGATTTTTTCTCGAATCTGGAATACAGTGTTTAGGTCAGGCAGTAACGATTTTGAGAAGAGATTGCAGTATATATCTAAAGAAGAGGCAACTCTTCTATCTAGAATGAAGAGGAGAGCCTTGAGATGGAGGAGAACAGCAAGGAATTTAATTATCTTTTCTGTTATTCTTGAGTTGGTTGCAGTGGGTTATGCTATAATGACAACAAGAACAGTGGACATGGACTGGAGAACGAGATCATTGCGTGTTTTACCCATGTTTCTTTTGCCTGGTTTATCATTCGCTTTGTATTATGGACTTTTGAGCTTCACGAAATTTTGTGATCATAGGGATCAGAAAGCATTGGAGAGGCTTCGGGATGAAAGGCAAGCAAAAATTGACGAGCTTAAAGAGAGGACGAATTACTACATGACTCAGCAACTCATTCAGAAATACGACCCTGATCCAGCAGCAAAAGCAGCTGCTGCATCGGTCCTTGCATCTAAATTGGGTGCAGATTCAGGGCTGAAAATGTTTCTTGGAGACGAATCACAACTGAACCCGCATGGCACAGGGAAGAGCAGCGATGTTGAGCTTCAACAATCCAGTGGTCTCCGGAAACGAAATCAATCAAATGGTAGATCTACCGGAGGCAATGTAGCCCAACAGCACTCTGATAAAGAAATGATTCAGTATGCAGGAAATGAAGTTTCAGAGAATTCTGCGCATAGCCAGCTTGTAGTTGAGCATCATAATCCCGCAGCTTTAGGTGCTCAAGATGGTGGTTGGATTGCTCGAATTGCCGCCTTGCTGGTGGGAGACGACCCTGCACAATCATATGCACTTATATGCGGCAATTGTCATATGCATAATGGTCTTGCAAGAAAGGAGGAATTCCCGTTCACCACTTACTATTGTCCCCATTGCCATGCCCTGAATAAACCCAAGAACTCGGACACACTTTCTTCAGATATTATGTCAACCGGTTCAGGATCTCCATTGACAGCAAGTGCAGATGGTAACGTGGTTGACCAAAAAATTGGGTCAATGGATCAAAAGGTATCTGGTAGCAGCAGTCCGGTGGAAGCGAGAGAGAAAATAGTGGCGGAGGATCCTGGCGTGGAAGAGAGTGAGAAAAAAGTGGCGGTGGAAGAAAGAGAAGCGAGTGAGAAAATAGTGGGGGAGGATACCACTGGTCATTAG 1251 43.96 MADEKEVKEVVEEKNDKKSKNKKGIFSRIWNTVFRSGSNDFEKRLQYISKEEATLLSRMKRRALRWRRTARNLIIFSVILELVAVGYAIMTTRTVDMDWRTRSLRVLPMFLLPGLSFALYYGLLSFTKFCDHRDQKALERLRDERQAKIDELKERTNYYMTQQLIQKYDPDPAAKAAAASVLASKLGADSGLKMFLGDESQLNPHGTGKSSDVELQQSSGLRKRNQSNGRSTGGNVAQQHSDKEMIQYAGNEVSENSAHSQLVVEHHNPAALGAQDGGWIARIAALLVGDDPAQSYALICGNCHMHNGLARKEEFPFTTYYCPHCHALNKPKNSDTLSSDIMSTGSGSPLTASADGNVVDQKIGSMDQKVSGSSSPVEAREKIVAEDPGVEESEKKVAVEEREASEKIVGEDTTGH 416
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00366 416 MobiDBLite consensus disorder prediction 365 416 - -
Sain12g00366 416 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 18 400 IPR040115 GO:0071782(PANTHER)|GO:0071786(PANTHER)|GO:0071786(InterPro)
Sain12g00366 416 MobiDBLite consensus disorder prediction 197 240 - -
Sain12g00366 416 Coils Coil 135 155 - -
Sain12g00366 416 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 279 329 IPR019273 -
Sain12g00366 416 MobiDBLite consensus disorder prediction 203 240 - -
Sain12g00366 416 MobiDBLite consensus disorder prediction 380 416 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00366 K23292 endoplasmic reticulum junction formation protein lunapark
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Event-related genes

Select Gene_1 Gene_2 Event_name
138713 Sain12g00366 Sain13g02402
138714 Sain12g00366 Sain3g00017
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:6953260 Sain13g02402 Sain-Chr13:133169833 wgd
Sain Sain-Chr12:6953260 Sain3g00017 Sain-Chr3:530745 wgd