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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00371 ATGGCGGCTTCTGCTGAACGCGAGAACTTCATCTATGTCGCTAAGCTCGCCGAACAAGCTGAACGATATGACGAGATGGTGGATGCCATGAAGAAGGTAGCAAAGTTAGATATCGAATTAACTGTTGAAGAAAGAAATTTGCTCTCTGTTGGATACAAGAATGTGGTGGGTTCACGTAGGGCATCATGGAGGATATTGTCCTCCATTGAGCAAAAAGAGGAGTCTAGAGGCAATGAAGTGAATGTAAAGCGGATTAAGGAATATAGGCAGAAGGTGGAAACAGAGCTGTCTAACATTTGCGGTGATATCATGACTGTGATTGATGAGCATCTGATTCCATCGTCCTCTGCTGGAGAATCTACCGTCTTCTACTACAAAATGAAGGGAGACTATTATAGGTATCTTGCAGAGTTCAAGTTTGGTAATGATAAAAAAGAGGCAGCTGATCAGTCACTGAAGGCGTATCAATTGGCTTCTACTGCTGCGGAGGATTTATCTCCTACCCATCCCATCCGATTGGGTTTGGCTTTGAACTTCTCTGTTTTCTATTATGAGATCATGAACTCTCCCGAAAGAGCCTGCCACCTGGCGAAACAAGCTTTTGATGAAGCTATCTCAGAGCTTGACTCCCTGAGTGAGGAGTCATACAAAGATAGCACCTTAATCATGCAGCTGCTGAGGGACAACCTCACTTTGTGGACTTCTGACATTCCAGAGGATGGAGAAGACCAAAAGATGGAGATCACCAAATCTGGTGCAGAAGAGGCAGAGTAA 774 44.44 MAASAERENFIYVAKLAEQAERYDEMVDAMKKVAKLDIELTVEERNLLSVGYKNVVGSRRASWRILSSIEQKEESRGNEVNVKRIKEYRQKVETELSNICGDIMTVIDEHLIPSSSAGESTVFYYKMKGDYYRYLAEFKFGNDKKEAADQSLKAYQLASTAAEDLSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGEDQKMEITKSGAEEAE 257
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00371 257 SUPERFAMILY 14-3-3 protein 6 236 IPR036815 -
Sain12g00371 257 MobiDBLite consensus disorder prediction 236 257 - -
Sain12g00371 257 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Sain12g00371 257 PIRSF 14-3-3 1 246 IPR000308 -
Sain12g00371 257 FunFam 14-3-3 protein epsilon 2 247 - -
Sain12g00371 257 Coils Coil 194 214 - -
Sain12g00371 257 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Sain12g00371 257 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Sain12g00371 257 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Sain12g00371 257 PRINTS 14-3-3 protein zeta signature 153 179 IPR000308 -
Sain12g00371 257 PRINTS 14-3-3 protein zeta signature 207 236 IPR000308 -
Sain12g00371 257 PRINTS 14-3-3 protein zeta signature 180 206 IPR000308 -
Sain12g00371 257 ProSitePatterns 14-3-3 proteins signature 2. 216 235 IPR023409 -
Sain12g00371 257 Gene3D - 1 249 IPR036815 -
Sain12g00371 257 MobiDBLite consensus disorder prediction 238 257 - -
Sain12g00371 257 PANTHER 14-3-3 PROTEIN 6 239 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Sain12g00371 257 SMART 1433-4 7 247 IPR023410 -
Sain12g00371 257 Pfam 14-3-3 protein 14 234 IPR023410 -
Sain12g00371 257 Coils Coil 13 33 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00371 K06630 14-3-3 protein epsilon
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Event-related genes

Select Gene_1 Gene_2 Event_name
138719 Sain12g00371 Sain13g02397
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:7185939 Sain4g00790 Sain-Chr4:22096901 dispersed
Sain Sain-Chr12:7185939 Sain13g02397 Sain-Chr13:133043731 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain4g00790 ACH 6 256 14-3-3 family AT1G26480 86.508 7.16e-164 452.0
Sain5g00697 . 2 256 14-3-3 family AT1G78300 87.5 8.26e-164 452.0
Sain5g01069 . 3 254 14-3-3 family AT3G02520 89.286 1.38e-167 462.0
Sain6g01623 ACH 5 247 14-3-3 family AT5G10450 86.42 9.99e-159 439.0
Sain6g01687 ACH 3 259 14-3-3 family AT1G78300 89.494 1.32e-170 469.0
Sain8g01545 ACH 4 247 14-3-3 family AT5G65430 86.066 9.97e-160 441.0
Sain9g01777 ACH 7 266 14-3-3 family AT1G35160 86.26 6.55e-169 465.0
Sain9g01804 . 2 245 14-3-3 family AT1G34760 76.113 3.29e-139 389.0
Sain9g04114 ACH 6 264 14-3-3 family AT1G26480 83.012 3.04e-160 443.0
Sain11g02688 . 2 256 14-3-3 family AT1G78300 86.719 2.67e-163 451.0
Sain12g00371 ACH 1 263 14-3-3 family AT2G42590 76.426 3.91e-149 415.0
Sain13g02397 ACH 1 263 14-3-3 family AT2G42590 76.806 1.05e-150 419.0
Sain10000549.1g00003 . 6 256 14-3-3 family AT1G26480 83.665 1.72e-159 441.0