AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00375 ATGGCTTCCATTTCACTCCTTTTCTTCATCTCCTTTCAAATTCTTTCTTCCATCTCTCAAGCAATCGTGCCAGCTTCCGACACATTCACGTACGTAAACGAAGGCGATTTCGGAGATTACATAGTCGAATACGACGCCAATTATCGAGCTCATCCCCCTTTCAATAACCCATTCCAACTTTGCTTCTATAACACCACCCCAAATGCATTCACTCTAGCTCTACGTATGGGTACAACCCGATCTGAATCCCTCATGCGATGGGTTTGGGAAGCGAACCGCGGAAACCCGGTTCGCGAAAACGCCACCCTCACTTTCGGTACCGACGGAAATCTCGTACTAGCCGACGCCGACGGCAAGATTGCATGGCAAACCAACACCTCTAACAAAGGTGTGGTTGGTTTTCAAGTGCTTCCAAATGGTAACATGGTGCTTCGTGACGCTAAGGGTAATTTCATATGGCAAAGCTTTGATTCACCAACCGATACTCTTTTAGTGGGACAATATCTCCGAGCCGATGGTCCGAGTCGACTCGTGAGTCGGAGTTCCGAGGTGAATAATGTCGATGGAGCATACAGTTTAGTGATGGAGCCAAAAGGGTTAGCCATGTATTACAAGAGCCCGAATTCGGTTCGTCCGATGCTGTATTGGACATCGATCGAATGGTTCACTATTGACAAGGGTAGTTTGGACAATTTAACTATTACTTCCGAGCCGAATTCGGATGAGGGGTTTTGTAACACCCGTAAATTTCGGATAAGTACAATTTCGAATCAATGTGAAACCGGTCTTTGA 792 46.34 MASISLLFFISFQILSSISQAIVPASDTFTYVNEGDFGDYIVEYDANYRAHPPFNNPFQLCFYNTTPNAFTLALRMGTTRSESLMRWVWEANRGNPVRENATLTFGTDGNLVLADADGKIAWQTNTSNKGVVGFQVLPNGNMVLRDAKGNFIWQSFDSPTDTLLVGQYLRADGPSRLVSRSSEVNNVDGAYSLVMEPKGLAMYYKSPNSVRPMLYWTSIEWFTIDKGSLDNLTITSEPNSDEGFCNTRKFRISTISNQCETGL 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00375 263 SMART blect-4 42 159 IPR001480 -
Sain12g00375 263 CDD B-lectin 54 159 IPR001480 -
Sain12g00375 263 Gene3D - 25 157 IPR036426 -
Sain12g00375 263 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 207 IPR036426 -
Sain12g00375 263 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 52 232 IPR051343 -
Sain12g00375 263 FunFam Os04g0303100 protein 78 211 - -
Sain12g00375 263 Pfam D-mannose binding lectin 88 172 IPR001480 -
Sain12g00375 263 ProSiteProfiles Bulb-type lectin domain profile. 26 157 IPR001480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00375 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:7267059 Sain12g00378 Sain-Chr12:7322835 dispersed
Sain Sain-Chr12:7267059 Sain12g00376 Sain-Chr12:7281515 tandem