AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00376 ATGGCTTCCATTTCACTTCTCTTCTTCATCTCCTTTCAACTTCTTTCTTCCATATCTCGAGCACTCGTGCCAGCTTCCGACACATTCACGATTGTAAACCAAGGCGATTTCGGCGATTACGTAGTCGAGTACGATGCCAATTATCGAGCTCTTCCCCCTTTTAGCGACCCGTTCCAACTTTGCTTCTATAACACCACCCCAAATGCATTCACTCTAGCTCTACGTATCGGTATAGTCCGATCCGAATCCCTCATGCGATGGGTTTGGGAAGCGAACCGTGGGAACCCGGTTCGCGAAAACGCCACACTCACCTTCGCCACTGACGGAAACCTTGTCCTGGAGGACGCCGATGGCAGGATTGCGTGGCAAACCAACACTGCCAACAAAGGTGTGGTTGGTTTTCAAGTGCTTCCAAATGGTAACATGGTGCTTCGTGACGCTAAGGGTAATTTCATATGGCAAAGCTTTGATTCACCAACCGATACTCTTTTAGTGGGTCAGTATCTCCGAGCCGGTGGTCCGAGTCGGCTGGTGAGTCGGAGTTCGGAGGTGAACAATGTCGATGGAGCATATAGTTTGGTGATGGAGCCCAAATGGTTAGCCATGTATTACAAGAGCCCTAACTCGCCTCGTCCAATGTTATATTGGTCGTCTATTGAATTGTTGACCAATGTTGGCATGGGTAGTTTGAGTAATTTCACTCTGACTTCGGAGGCCGAGACTGATGAGGGTTATCTTTATTATTTGACTTTCGAGTACTTTATGACAAACCCATCATCCGATTCGAATCGCAACTTGGCGTATTCGCGATATAATAACACCTTCTCGTACCTTCGATTAGGGATAGATGGAAACCTTAGATTCTTGACGTATAACCGCAACGTGCAAGGCGTTTCTTGGGAAGTTGTGTACACGTTTCTTGATAGGAACTCGGTACAAGACGAATGCCAGTTACCGGAAAGATGCGGGAAGTTTGGTCTGTGTGAGGATTGCCAATGTGTGGCATGCCCAACACCAAATGGGCTAAGTGGGTGGAGTAAAGATTGCGATTCGAAAAAGGTGACATCTTGCAAGAGTGGTGAGTTTGGGTACTATAAGCTCGAGGGGGTTGACCATTTTATGATCAAGTATACGAGGGGAGATGGGCCGACGAAGCAGAGCGATTGCGAGAGCAAATGCAGCACGGATTGTAAGTGCATGGGGTATTTCTATCATACAGATCGATCGAGGTGTTGGATGTGGACCTAA 1248 47.52 MASISLLFFISFQLLSSISRALVPASDTFTIVNQGDFGDYVVEYDANYRALPPFSDPFQLCFYNTTPNAFTLALRIGIVRSESLMRWVWEANRGNPVRENATLTFATDGNLVLEDADGRIAWQTNTANKGVVGFQVLPNGNMVLRDAKGNFIWQSFDSPTDTLLVGQYLRAGGPSRLVSRSSEVNNVDGAYSLVMEPKWLAMYYKSPNSPRPMLYWSSIELLTNVGMGSLSNFTLTSEAETDEGYLYYLTFEYFMTNPSSDSNRNLAYSRYNNTFSYLRLGIDGNLRFLTYNRNVQGVSWEVVYTFLDRNSVQDECQLPERCGKFGLCEDCQCVACPTPNGLSGWSKDCDSKKVTSCKSGEFGYYKLEGVDHFMIKYTRGDGPTKQSDCESKCSTDCKCMGYFYHTDRSRCWMWT 415
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00376 415 ProSiteProfiles Bulb-type lectin domain profile. 26 157 IPR001480 -
Sain12g00376 415 CDD B-lectin 42 159 IPR001480 -
Sain12g00376 415 PIRSF SLG 1 415 IPR035446 -
Sain12g00376 415 Pfam S-locus glycoprotein domain 250 341 IPR000858 GO:0048544(InterPro)
Sain12g00376 415 Pfam PAN-like domain 381 415 IPR003609 -
Sain12g00376 415 Pfam D-mannose binding lectin 88 169 IPR001480 -
Sain12g00376 415 ProSiteProfiles PAN-Apple domain profile. 357 415 IPR003609 -
Sain12g00376 415 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 217 IPR036426 -
Sain12g00376 415 SMART blect-4 42 159 IPR001480 -
Sain12g00376 415 CDD PAN-AP-plant 356 415 - -
Sain12g00376 415 Gene3D - 25 158 IPR036426 -
Sain12g00376 415 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 53 413 IPR051343 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00376 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:7281515 Sain12g00378 Sain-Chr12:7322835 dispersed
Sain Sain-Chr12:7263897 Sain12g00376 Sain-Chr12:7281515 proximal
Sain Sain-Chr12:7267059 Sain12g00376 Sain-Chr12:7281515 tandem