AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00378 ATGGCGGCTACTACTTCTCTTTTCCTCATCTTCTTTTCCTTCCTCTTATTCATCTCCCAAGCCACTGTTCCTCCCTCCGACACCTTCCGATACGTAAACTCCGGCCCATACGGAGATTCCGACGAAGTCTCCACCGAATACGACCCAACCTACCGCCCTCTTCCGCCCTTCACTTCCCCTTTCCAACTCTGTTTCTACAATACCACCCCCAATGCCTACACTCTCAGTCTTCGCATGGGTACCAGACGTTCAAGATCCCTCATGCGTTGGGTCTGGGAAGCCAACCGCGGAAAACCCGTTCGCGAAAACGCCACTTTCTCATTCAGCACCGACGGAAACCTGGTCTTAGCCGATTCAGACGGCCGGATTGTATGGCAAACCAACACCGCCAATAAGGGTGTCGTTGGATTCCAAATCCTCCCAACCGGTAACATGGTGCTTCATGACGCTAACGGTAATTTCATCTGGCAAAGCTTTGATTCGCCAACTGATACCCTCTTATTCGGTCAGAGCCTCCGGATCGGAGGTGCTAATAAGCTTGTGAGCAGAGCTTCCGTAACGGAAAACGTTAACGGCGTTTATAGTTTGGTATTAGACCCTCAACAATTGGGGTTGTATTACAAGACGACCATGCGTTACTGGTCGTCTTGTAATACCGTTAACCGTGATTTGGTTAACGCAACTTTTGAAATTGCGGAAGCGGAATATTCTGATAGTAACTTTAACTCACTACGGTGTCGTCTCTCAAACGGGGACGAACCTACTCTGCTTTTTGGGACACTTAGATGCAACAGCACGTTATCGTATCTTCGATTGGGGATCGATGGGAACCTTAGATTGTTCAGTTATCGGCAAAATGCGAATGCGGCCGCGTGGAGCTTGGTGTTCACTTTTTTCCGTAAAGATGCAATCAGGGTGCAGGCGGAAATCGAAGACGAGTGTCAATTGCCTGATCGGTGTGGGAAGTTTGGGGTTTGTGAGGATAGTCAATGCGTTGGGTGCCCGACACCGAATGGGGTTTTCGCGTGGAGTAAAGATTGTGTTGCAAAGTTGCCGGGTTGTGACGCGAGTGGTTTTCGTTATTACGAGCTCAAAGGGGTGGACCATTTCACGGTGAAATATAGTGCAGGGACGGGTCCGGTGAACCGGAAGGACTGCGAGAGTAAATGCACGAAGGATTGCAAGTGTTTGGGGTATTTTTATCATACGGATAGATCGAGATGTTGGGTTGCTCGCGAGCTGAAAACTTTGACTAGAGTTGGGAACTCGACTCATGTGGCGTACATCAAAACGCCCATCCGTTAA 1305 49.27 MAATTSLFLIFFSFLLFISQATVPPSDTFRYVNSGPYGDSDEVSTEYDPTYRPLPPFTSPFQLCFYNTTPNAYTLSLRMGTRRSRSLMRWVWEANRGKPVRENATFSFSTDGNLVLADSDGRIVWQTNTANKGVVGFQILPTGNMVLHDANGNFIWQSFDSPTDTLLFGQSLRIGGANKLVSRASVTENVNGVYSLVLDPQQLGLYYKTTMRYWSSCNTVNRDLVNATFEIAEAEYSDSNFNSLRCRLSNGDEPTLLFGTLRCNSTLSYLRLGIDGNLRLFSYRQNANAAAWSLVFTFFRKDAIRVQAEIEDECQLPDRCGKFGVCEDSQCVGCPTPNGVFAWSKDCVAKLPGCDASGFRYYELKGVDHFTVKYSAGTGPVNRKDCESKCTKDCKCLGYFYHTDRSRCWVARELKTLTRVGNSTHVAYIKTPIR 434
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00378 434 CDD PAN-AP-plant 355 432 - -
Sain12g00378 434 PIRSF SLG 1 434 IPR035446 -
Sain12g00378 434 Gene3D - 57 160 IPR036426 -
Sain12g00378 434 SMART blect-4 45 162 IPR001480 -
Sain12g00378 434 ProSiteProfiles PAN-Apple domain profile. 354 433 IPR003609 -
Sain12g00378 434 CDD B-lectin 45 162 IPR001480 -
Sain12g00378 434 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 215 IPR036426 -
Sain12g00378 434 ProSiteProfiles Bulb-type lectin domain profile. 42 160 IPR001480 -
Sain12g00378 434 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 58 431 IPR051343 -
Sain12g00378 434 Pfam D-mannose binding lectin 91 175 IPR001480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00378 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:7267059 Sain12g00378 Sain-Chr12:7322835 dispersed
Sain Sain-Chr12:7281515 Sain12g00378 Sain-Chr12:7322835 dispersed
Sain Sain-Chr12:7322835 Sain12g00380 Sain-Chr12:7344765 dispersed
Sain Sain-Chr12:7322835 Sain12g00379 Sain-Chr12:7335647 tandem