AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00390 ATGGATTCACTTAATCAATCAGCTCTTACCCCAAATAAGACCAGATTGGCTCGTACTATGACCAAAGTTTTGCATTTTCGAGCAGCAACGGAGGATAAAAGTCGAAAAACTAAGGTAGGTGAAAAGGTCAAGAATGATGACGATCCAAGGAAGTTATTTAGTGACGAAAATGACGAGTTTCGAAACAGAGCTGCGATGGATGCATTTATTGCCAAAGTTTTTGCGACTATCTCATCGGTGAAAGCTGCGTATGCCCAGTTGCAGTATGCTCAATCTCCTTACGACGCTGAAGGAATTCAGTCGGCTGATCAGATCATGGTCTCTGAACTCAAGAGCTTATCGGAGTTCAAACAGTCGTTCTTGAAGAACCATCTTGACGATAACTCCCCTGAAACAACTCACTTGTTGGCTGAAATTCGAGAACAGAAAAATCTCTTACAAATGTACGAAATCACCGGAAAAAAGCTGGACAGTCAGAGCAAGCTTAAAGACTCCGAGATCATATTCTTGAAAGAGAAATTAGACGAAGCCAATAGAGAAAATAAGTCGATCGAGAAAAGATTAAACGCAAGCGGGCCTTTATCACCTCACGAGAAGCTTCATTTTCCATCGTTTGACGATTTCATATCATCTCTTCGGCAAACCACGAAATCCGTTAGAAGTTTCGTGAAGCTCATGGTCTGTGAAATGGAATCAGCCAATTGGGATTTGGATTCAGCTGCGGGTTCGATCCAACCGGATGTTGTTTACTCAGACCCCACCCATAAATGCTACGCGTTCGAGTCGTTTATTAGTCGAGTGATGTTCGATGGGTTCAATCACTCGAGTTTTTCCATAATCGACGATTCCCAGTCTCCGGTCAACGATAAACGGTTTTTCATCGACAATTTAACGGAACTGAAATCCTTGAAAGCAAAAGAGTACATCAAATTGAAACCAAAATCCATGTTTACGAAATTTTGCTGGTTTAAGTACCTGAGACTTGTTCATCCCGTAATGGAATTCTCTCTTTTCGGGAATTTGAACCAAAGAAACCTGGTGGCTGCCGGAAAATGCCCGAAAACGGCTTTCTTTTCGGCGTTTGCTGATGTGGCGAAGCGGGTTTGGCTCCTCCATTGTTTGGCATTCGCGTTTGAATGGAACGAGGCGGCCGCCGCCGCCACGTTTCAGGTGAGAAAAGGCAGCCGGTTCACGGAGGTGTTCATGGAAAGTGTAAACGAAGAACCGCCGAAAGCGTCGCCGGAGGTGGCGTTCACGGTGGTGCCGGGGTTCAAGGTGGGTAAAACCGTTATACAGTGTCAAGTGTATTTGAGTTGA 1317 44.57 MDSLNQSALTPNKTRLARTMTKVLHFRAATEDKSRKTKVGEKVKNDDDPRKLFSDENDEFRNRAAMDAFIAKVFATISSVKAAYAQLQYAQSPYDAEGIQSADQIMVSELKSLSEFKQSFLKNHLDDNSPETTHLLAEIREQKNLLQMYEITGKKLDSQSKLKDSEIIFLKEKLDEANRENKSIEKRLNASGPLSPHEKLHFPSFDDFISSLRQTTKSVRSFVKLMVCEMESANWDLDSAAGSIQPDVVYSDPTHKCYAFESFISRVMFDGFNHSSFSIIDDSQSPVNDKRFFIDNLTELKSLKAKEYIKLKPKSMFTKFCWFKYLRLVHPVMEFSLFGNLNQRNLVAAGKCPKTAFFSAFADVAKRVWLLHCLAFAFEWNEAAAAATFQVRKGSRFTEVFMESVNEEPPKASPEVAFTVVPGFKVGKTVIQCQVYLS 438
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00390 438 Coils Coil 167 187 - -
Sain12g00390 438 Pfam Plant protein of unknown function (DUF641) 62 187 IPR006943 -
Sain12g00390 438 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 17 438 IPR040225 GO:0009639(InterPro)|GO:0009959(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00390 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138723 Sain12g00390 Sain13g02386
138724 Sain12g00390 Sain3g00358
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:7608887 Sain9g02965 Sain-Chr9:178289790 dispersed
Sain Sain-Chr3:222417135 Sain12g00390 Sain-Chr12:7608887 transposed
Sain Sain-Chr1:93610624 Sain12g00390 Sain-Chr12:7608887 wgd
Sain Sain-Chr12:7608887 Sain13g02386 Sain-Chr13:132787923 wgd
Sain Sain-Chr12:7608887 Sain3g00358 Sain-Chr3:8462415 wgd