AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00391 ATGACAGAAATCAGGGTTTCACCTCTTTATCTGATTCTCTCCACCTTCGTCTCCATTTATCTGTTTTACTTTCAAGCTCAAGCCGCCCCTGCTGCTACGGTGATTAAGCAATTATCTTCCATTCTTGAGTGGACAGCTAGGTCTTCATCTAAATCACCATCATCAGATGGGAATATTCTTCAATTTGAGGATGGATATTTGGTAGAAACCGTTGTGGAAGGGAATCAATTAGGGGTTGTGCCTTATTCAATTCGGGTCTCGCAGGATGGTGAATTATTTGCTGTTGATGCAGTCAATAGTAACATCGTTCGAATTACTCCTCCACTGTCTCAATATAGTAGGGCAAGATTGATTGCCGGGTCCTTTCAGGGTTACACTGGACATGTAGATGGAAAACCAAATGATGCTCGTTTTGATCGTCCTAAAGGGGTTACTATGGATGATAAAGGGAATGTTTATGTTGCTGATACCTCAAATCTTGCCATTAGAAAGATTGGTGAAGCAGGTGTGACGACAATTGCTGGAGGAAAATCAAACGTAGCAGGGTACAGGGACGGGCCAAGTGAGGATGCACAGTTTTCAACTGACTTTGATGTAATTTATGTGAGGCCAACTTGTTCATTGCTAGTTATTGACCGAGGAAATGCTGCTCTTCGACAAATTTCTCTGAATCAAGAGGATTGTGATTTCCACTACAGCTCCGTTTCTTCCACAGATCTCGTTTTGATAGTTGGTGCTATCTTGATAGGATATGTTGTATCCATGCTTCAACAAGGTTATGGTCCCTCATATTTCTCAAAAGTGCATAAGGTAGATAATGATGCGAAAGGATCAAGCAAGGAAACACCCACTAAAACCCAAACTCAAACTGTGGAAACCATTAGAGAGGAACAAGAAGCAGGATGGCCATCGTTTGGGCAGCTCATTCTGGATCTATTCAAGCTCGCTCTCGAAGGCTTTGGTAACATCTTTGTTTCTTTCAACCCCTTAAACACTCCTAAAAAAGGCCTCACCCCATTAAAAGATTCTCTCATAATGCCCGAAGACGAGCCTGCTAATCCGCCCCCATTAGTTCAAAAACACAGAACTCCAACCCCCCTTTCAGAAACCCGCCATGCCCACAACCCAAACGAAAAATACCCAGAAACAAAGCCCACTAAGCTCAGATCATCTAGCTTAAAAGATCCAAGCAAGCACAGAGTCTCGAAGAGAGAAGAATATGCCGAGTTTTATGGGGGGGCTAGTGGCGAAGTTCCTCATGTTCGGTCCAAGAGTCAGAAGGAAAGAACAAAGCATCGGCCAAGAGAAAAACGAGCAGAGGTTCCGTTCCAGGGCGAGCAAAAACCGGTTGACCTAAAACCGGTCAACTACGATGATCCTAAGTTTAGCTATATGAGGAACAAGTATGGAGACTCTTATCGTTACAATTAA 1431 43.33 MTEIRVSPLYLILSTFVSIYLFYFQAQAAPAATVIKQLSSILEWTARSSSKSPSSDGNILQFEDGYLVETVVEGNQLGVVPYSIRVSQDGELFAVDAVNSNIVRITPPLSQYSRARLIAGSFQGYTGHVDGKPNDARFDRPKGVTMDDKGNVYVADTSNLAIRKIGEAGVTTIAGGKSNVAGYRDGPSEDAQFSTDFDVIYVRPTCSLLVIDRGNAALRQISLNQEDCDFHYSSVSSTDLVLIVGAILIGYVVSMLQQGYGPSYFSKVHKVDNDAKGSSKETPTKTQTQTVETIREEQEAGWPSFGQLILDLFKLALEGFGNIFVSFNPLNTPKKGLTPLKDSLIMPEDEPANPPPLVQKHRTPTPLSETRHAHNPNEKYPETKPTKLRSSSLKDPSKHRVSKREEYAEFYGGASGEVPHVRSKSQKERTKHRPREKRAEVPFQGEQKPVDLKPVNYDDPKFSYMRNKYGDSYRYN 476
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00391 476 PANTHER - 21 474 - -
Sain12g00391 476 MobiDBLite consensus disorder prediction 339 476 - -
Sain12g00391 476 SUPERFAMILY NHL repeat 75 218 - -
Sain12g00391 476 Gene3D - 15 223 IPR011042 -
Sain12g00391 476 Pfam NHL repeat 138 164 IPR001258 GO:0005515(InterPro)
Sain12g00391 476 MobiDBLite consensus disorder prediction 365 407 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00391 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:7634914 Sain8g02226 Sain-Chr8:144659306 dispersed
Sain Sain-Chr12:7634914 Sain4g00169 Sain-Chr4:4605023 transposed