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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00392 ATGGGTTGTTTTGGATCGTCGCTAATTAAACAAGACAGAACAACGAAACAAATAAGGAAGCCAAAGCCCTGGAAATTCCCACGGCCGGTTACATGGAGTCAGCTGGTGCAGATGCGTGACGAGTTTTGGGATACAGCTCCACACCATGGTGGCAAAAAAGAAATCTGGGATGCGATACACGCAGCAGCTGAGGCTGATATAGAGCTTGCTCAAGCAATTGTGGACAGTGCAGGGGTCATTGTTCATAAACCTGATATGACAGTTTGTCATGATGAAGGAGGTACCAAATACGAAATACCAAGGTATGTCTTGAGCGAGCCAACAAACTTGATACAACTAAGCTGA 345 45.51 MGCFGSSLIKQDRTTKQIRKPKPWKFPRPVTWSQLVQMRDEFWDTAPHHGGKKEIWDAIHAAAEADIELAQAIVDSAGVIVHKPDMTVCHDEGGTKYEIPRYVLSEPTNLIQLS 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00392 114 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 10 111 IPR039869 -
Sain12g00392 114 Gene3D - 31 104 IPR038169 -
Sain12g00392 114 Pfam Ubiquitin-binding domain 15 112 IPR032752 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00392 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:7638569 Sain9g02968 Sain-Chr9:178417637 dispersed
Sain Sain-Chr1:93553356 Sain12g00392 Sain-Chr12:7638569 wgd