Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sain12g00396	ATGACGTCAGGGACGAGGATGCCTACATGGAAGGAGAGAGAGAATAACAAAAGGAGAGAGAGGAGGAGGAGAGCCATCGCCGCGAAGATATTCACTGGTTTGAGGATGTACGGCAACTACAAGCTGCCTAAGCATTGTGATAACAACGAGGTCCTCAAAGCCCTCGCCGATGAGGCTGGCTGGACCGTCGAACAGGACGGCACCACCTATCGTAAGGGATGCAAGCCTTTGGAACGGATGGAAATTGGTGGATCTGCATCAGCCAGCCCATGCTCATCATCTTACCACCCAAGTCCCTACGCTTCCTATCACCCCAGCCCCCCCTCCTCTTCCATCGCCAGCCCGTCCTCCTCTAACTACGCACCCAACGCGAACCCTGATTCACTCATTCCATGGCTCAAGAATCTTTCCTCTGCATCCTCCTCTTCAAACTCAGCCAAGCTTCCGCATCTTTACATCCACACTGGCTCCATTAGTGCACCCGTGACTCCACCCATGAGCTCTCCAACTGCTCGATCCCCTCCACGCCTCAAAACCGACACCACCTATGCACCTCATCACTTCTCCTATCTTCCCAGCTCTTCGACTCCACCGAGCCCTGGTTGCCACACCCAGCTTCCCAACTCCGAATGGTTCTCTGCAGGCATTCGTCCCACGTCCCCAACTTTCAGTCTCGTGGCATCAAACCCGTTTGGGTTCTTCAAGGAAGCGGGTGTATCTCATGGTGGATCACGAATGTGGACTCCTGGACAAAGTGGGACTTGCTCTCCTGCAATTCCTCCAGGGTTTGACATTCCAATGGCGGAAGTAGTGGTTTCTGATGAATTTGCATTCGGTAGCAATGCAGGAGGAGGGAGGGTGAAGCCGTGGGAAGGAGAGAGGATCCACGAGGTGTGTGTGTCTGATGATCTTGAGCTTACACTTGGCACTTCAAAAACCAGATGA	945	53.54	MTSGTRMPTWKERENNKRRERRRRAIAAKIFTGLRMYGNYKLPKHCDNNEVLKALADEAGWTVEQDGTTYRKGCKPLERMEIGGSASASPCSSSYHPSPYASYHPSPPSSSIASPSSSNYAPNANPDSLIPWLKNLSSASSSSNSAKLPHLYIHTGSISAPVTPPMSSPTARSPPRLKTDTTYAPHHFSYLPSSSTPPSPGCHTQLPNSEWFSAGIRPTSPTFSLVASNPFGFFKEAGVSHGGSRMWTPGQSGTCSPAIPPGFDIPMAEVVVSDEFAFGSNAGGGRVKPWEGERIHEVCVSDDLELTLGTSKTR	314

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sain12g00396	314	MobiDBLite	consensus disorder prediction	96	120	-	-
	Sain12g00396	314	MobiDBLite	consensus disorder prediction	1	21	-	-
	Sain12g00396	314	MobiDBLite	consensus disorder prediction	160	177	-	-
	Sain12g00396	314	PANTHER	BES1-BZR1 HOMOLOG PROTEIN 3-RELATED	1	314	IPR033264	GO:0003700(InterPro)\|GO:0006351(InterPro)\|GO:0009742(InterPro)
	Sain12g00396	314	MobiDBLite	consensus disorder prediction	159	179	-	-
	Sain12g00396	314	Pfam	BES1-BZR1 plant transcription factor, N-terminal	4	137	IPR008540	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sain12g00396	K14503	brassinosteroid resistant 1/2

Event-related genes

Select	Gene_1	Gene_2	Event_name
	138725	Sain12g00396	Sain13g02353

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Sain	Sain-Chr12:7700456	Sain8g02868	Sain-Chr8:174712098	dispersed
	Sain	Sain-Chr1:93277385	Sain12g00396	Sain-Chr12:7700456	wgd
	Sain	Sain-Chr12:7700456	Sain13g02353	Sain-Chr13:132218325	wgd

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sain1g01287	.	1	325	BZR Transcription Factor family	AT1G78700	67.062	1.01e-118	343.0
	Sain6g00739	ACH	22	335	BZR Transcription Factor family	AT1G75080	52.681	2.40e-75	232.0
	Sain7g01033	ACH	22	335	BZR Transcription Factor family	AT1G75080	61.059	2.01e-96	286.0
	Sain8g02868	ACH	22	333	BZR Transcription Factor family	AT1G19350	60.0	8.60e-102	300.0
	Sain9g00915	ACH	22	335	BZR Transcription Factor family	AT1G75080	56.74	1.94e-93	278.0
	Sain11g02235	ACH	23	333	BZR Transcription Factor family	AT1G75080	60.897	3.03e-106	311.0
	Sain12g00396	ACH	1	325	BZR Transcription Factor family	AT1G78700	68.168	4.39e-112	326.0
	Sain13g02353	ACH	3	325	BZR Transcription Factor family	AT1G78700	68.807	6.93e-116	335.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Sain	BES1_N	3.1e-61	No_clan		TF	BES1