AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00415 ATGAGATGTAACGCATGCTGGCGGGAGCTGGAAGGGAGAGCTATCTCTACCACATGTGGACATATCTTATGCAATGAAGATGCCAGTAAGATACTAAGTAGCGACGCAGCTTGCCCTATTTGTGATCAAGTACTTTCTAAAAGTCTCATGAAACCTGTGGATATCAACCCAAATGAAGAATGGATAAATATGGCTATGGCTGGCATATCTCCACAGATACTAATGAAGAGCGCATATAGAAGTGTGTCATTCTACATTGGACAAAAGGAACTAGAAATGCAATTCAAGATGAACAAGATAGTAGCTCAATGCCGGCAAAAATGTGAAGCGATGCAAGAGAAGTTCACAGAAAAAATGGAGCAGGTGCATACTGCATATCAGAAAATGGCCAAAAGGTGTCAAATGATGGAACAAGAAATTGAAAACTTGTCCAAAGATAAACAGGAGCTCCAAGAAAAGTTTTCTGAGAAATCCAGGCAAAAGAGAAAACTGGACGAGATGTATGATCAATTGAGAAATGAGTATGAATCGGTCAAACGGTCAGCCATTCAACCAGCAAACAATTTCTTCTCAAGGGCTGAACCTGATCTGTTTGCCAGTCCTGCTAATATGATGGATAATAGAGATTCCATGAGGAAAGATTGGTCGGTTCTCACCCCTGAAACTCCAGGACCTCGCGAAGATATATGGCCACCGACAACAAGGCAGAACAGTGGTAACTCTGGGCAATTCGACATTTCTAGTAACTCACCCGTAAAACATTCAGCAATGCCAGTTGAAAACAGAAGAGCTGTTGGTCGCCCCATGTTCGGAGGTGGAGGTGGAGGTGGTGGTGGTGGTGGTGCAGCCAACAATCCCTCTATGACTTTGAGAAATCTCATATTATCACCAATGAAACGGCCTCAGCTCTCTCGTAGCCGACCTCAACTCTTCACGTAA 939 43.45 MRCNACWRELEGRAISTTCGHILCNEDASKILSSDAACPICDQVLSKSLMKPVDINPNEEWINMAMAGISPQILMKSAYRSVSFYIGQKELEMQFKMNKIVAQCRQKCEAMQEKFTEKMEQVHTAYQKMAKRCQMMEQEIENLSKDKQELQEKFSEKSRQKRKLDEMYDQLRNEYESVKRSAIQPANNFFSRAEPDLFASPANMMDNRDSMRKDWSVLTPETPGPREDIWPPTTRQNSGNSGQFDISSNSPVKHSAMPVENRRAVGRPMFGGGGGGGGGGGAANNPSMTLRNLILSPMKRPQLSRSRPQLFT 312
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00415 312 ProSiteProfiles Zinc finger RING-type profile. 3 42 IPR001841 -
Sain12g00415 312 MobiDBLite consensus disorder prediction 231 254 - -
Sain12g00415 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 1 312 - GO:0051026(PANTHER)
Sain12g00415 312 Coils Coil 126 181 - -
Sain12g00415 312 MobiDBLite consensus disorder prediction 221 254 - -
Sain12g00415 312 Pfam zinc-RING finger domain 2 43 IPR001841 -
Sain12g00415 312 FunFam E3 ubiquitin-protein ligase CCNB1IP1 homolog 1 53 - -
Sain12g00415 312 SUPERFAMILY RING-U-box 2 50 - -
Sain12g00415 312 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 1 53 IPR013083 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00415 K10639 E3 ubiquitin-protein ligase CCNP1IP1 [EC:2.3.2.27]