AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00436 ATGAAATTATTATTTGGTAAATGGACTGCCATCGCCAAAGAATCGCTTGATCGAGCTGCCAGTTTTGCCAAATTCCTCTGCCTTCTTCACGTCACCAATACTTACATCTTTTCCCCTACTCTTGTGTACGGATCGAGCATGATGCCGACGTTGAATTTAGCCGGTGATGTTGTATTATCGGAATTTATATCGCATAGGCTGGGGAAGGTGAGCCCTGGAGATGTTGTGTTGATTCAATCACCTGAAAACCCTAAAAAAACATTAACGAAACGCATTGTCGCTGTGGAAGATGAAGTTGTTTCTTTTTTGGTGAATCCCAGCCACAGTGATAGATCTCGTACAGTAATGGTGCCAAAAGGGCATGTGTGGATCCAAGGTGATAATACTTGCACGTCTCATGATTCTCGGCACTTTGGTCCTATCCCTTATGGCCTTATCCAAGGGAAAGTTCGTTGTAGGGTATGGCCACTCGATTGCGCTGGATCATTATGA 492 44.11 MKLLFGKWTAIAKESLDRAASFAKFLCLLHVTNTYIFSPTLVYGSSMMPTLNLAGDVVLSEFISHRLGKVSPGDVVLIQSPENPKKTLTKRIVAVEDEVVSFLVNPSHSDRSRTVMVPKGHVWIQGDNTCTSHDSRHFGPIPYGLIQGKVRCRVWPLDCAGSL 163
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00436 163 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 7 157 IPR052064 GO:0006627(PANTHER)|GO:0042720(PANTHER)
Sain12g00436 163 ProSitePatterns Signal peptidases I serine active site. 44 51 IPR019756 GO:0004252(InterPro)|GO:0016020(InterPro)
Sain12g00436 163 SUPERFAMILY LexA-Signal peptidase 34 163 IPR036286 -
Sain12g00436 163 Gene3D Umud Fragment, subunit A 32 161 - -
Sain12g00436 163 CDD S26-SPase-I 38 150 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Sain12g00436 163 Pfam Signal peptidase, peptidase S26 113 155 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Sain12g00436 163 Pfam Signal peptidase, peptidase S26 21 100 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Sain12g00436 163 ProSitePatterns Signal peptidases I signature 3. 122 135 IPR019758 GO:0004252(InterPro)|GO:0016020(InterPro)
Sain12g00436 163 FunFam Inner membrane protease subunit 1 33 162 - -
Sain12g00436 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 35 51 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Sain12g00436 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 117 136 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Sain12g00436 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 88 100 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00436 K09647 mitochondrial inner membrane protease subunit 1 [EC:3.4.21.-]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
138732 Sain12g00436 Sain3g00372
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:9093442 Sain1g00895 Sain-Chr1:69795500 dispersed
Sain Sain-Chr12:9093442 Sain3g00372 Sain-Chr3:8664307 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g00285 ACH 1 170 MADS-box Transcription Factor family AT2G45660 70.588 4.69e-80 236.0
Sain1g00895 . 9 168 MADS-box Transcription Factor family AT1G29960 51.25 2.43e-60 183.0
Sain1g01264 . 9 252 MADS-box Transcription Factor family AT4G18960 70.612 5.77e-121 343.0
Sain1g01745 . 112 171 MADS-box Transcription Factor family AT5G15800 68.333 1.23e-19 79.0
Sain2g00120 . 1 252 MADS-box Transcription Factor family AT2G45650 62.016 1.97e-102 296.0
Sain2g00121 . 1 209 MADS-box Transcription Factor family AT2G45660 61.611 3.30e-78 232.0
Sain2g00245 . 3 161 MADS-box Transcription Factor family AT5G60440 46.296 1.15e-40 137.0
Sain3g00372 ACH 9 164 MADS-box Transcription Factor family AT1G29960 50.641 9.19e-56 171.0
Sain3g01135 . 1 137 MADS-box Transcription Factor family AT5G55690 29.167 1.07e-16 76.6
Sain3g01136 . 1 137 MADS-box Transcription Factor family AT5G55690 29.861 5.46e-19 82.0
Sain3g01137 . 1 137 MADS-box Transcription Factor family AT5G55690 29.167 1.07e-16 76.6
Sain3g01429 . 1 137 MADS-box Transcription Factor family AT5G55690 35.417 3.65e-24 96.7
Sain4g00378 . 1 243 MADS-box Transcription Factor family AT1G24260 74.0 1.67e-122 347.0
Sain4g00460 . 1 250 MADS-box Transcription Factor family AT3G02310 58.4 3.51e-93 272.0
Sain4g00464 . 1 61 MADS-box Transcription Factor family AT5G60910 91.803 2.48e-35 117.0
Sain4g02792 . 63 250 MADS-box Transcription Factor family AT3G02310 50.0 4.91e-53 168.0
Sain5g00454 . 112 171 MADS-box Transcription Factor family AT5G15800 68.333 1.03e-19 79.0
Sain5g01606 . 1 250 MADS-box Transcription Factor family AT3G02310 61.905 3.65e-107 308.0
Sain6g00457 . 1 244 MADS-box Transcription Factor family AT1G24260 60.081 1.03e-96 281.0
Sain6g00705 . 47 157 MADS-box Transcription Factor family AT1G29960 33.835 6.99e-16 73.2
Sain6g00896 . 63 221 MADS-box Transcription Factor family AT3G02310 47.879 2.03e-42 140.0
Sain6g00969 . 1 236 MADS-box Transcription Factor family AT5G60910 58.264 8.48e-88 258.0
Sain6g00975 . 1 250 MADS-box Transcription Factor family AT3G02310 58.661 1.49e-97 283.0
Sain6g01443 . 1 202 MADS-box Transcription Factor family AT5G20240 58.911 8.26e-84 245.0
Sain6g01851 . 63 180 MADS-box Transcription Factor family AT2G24840 33.898 2.53e-14 66.2
Sain6g01852 . 63 182 MADS-box Transcription Factor family AT2G24840 37.5 7.52e-19 77.8
Sain6g01853 . 5 147 MADS-box Transcription Factor family AT5G60440 39.86 1.05e-24 95.5
Sain7g00501 . 1 194 MADS-box Transcription Factor family AT5G65070 36.041 8.78e-36 122.0
Sain7g00560 . 1 211 MADS-box Transcription Factor family AT1G71692 57.346 9.36e-74 220.0
Sain7g00566 . 1 230 MADS-box Transcription Factor family AT4G09960 64.655 4.77e-99 286.0
Sain7g01142 ACH 1 231 MADS-box Transcription Factor family AT3G54340 57.627 2.44e-92 269.0
Sain7g01249 . 1 236 MADS-box Transcription Factor family AT5G60910 55.466 4.83e-88 259.0
Sain7g01354 . 1 238 MADS-box Transcription Factor family AT2G22540 45.833 1.30e-66 204.0
Sain7g01748 . 1 172 MADS-box Transcription Factor family AT3G57230 45.349 3.43e-47 154.0
Sain8g00272 . 1 134 MADS-box Transcription Factor family AT3G05860 31.852 2.34e-15 69.7
Sain8g02030 . 1 69 MADS-box Transcription Factor family AT3G30260 56.522 2.27e-20 82.4
Sain8g02031 . 63 169 MADS-box Transcription Factor family AT5G65060 25.893 1.88e-06 43.1
Sain8g02420 . 1 177 MADS-box Transcription Factor family AT1G69120 71.751 3.46e-90 265.0
Sain8g02630 . 1 75 MADS-box Transcription Factor family AT2G45650 65.333 5.25e-27 97.4
Sain8g02745 . 1 170 MADS-box Transcription Factor family AT3G57230 67.059 6.03e-80 237.0
Sain8g02972 . 1 187 MADS-box Transcription Factor family AT3G54340 55.026 5.93e-68 206.0
Sain9g00601 . 1 244 MADS-box Transcription Factor family AT1G18750 59.109 1.84e-98 295.0
Sain9g00689 . 1 236 MADS-box Transcription Factor family AT5G60910 58.506 9.15e-85 250.0
Sain9g00796 ACH 1 231 MADS-box Transcription Factor family AT3G54340 54.661 5.49e-88 258.0
Sain9g01156 . 1 184 MADS-box Transcription Factor family AT1G22130 51.596 1.32e-50 169.0
Sain9g01661 . 86 220 MADS-box Transcription Factor family AT3G57230 59.259 1.92e-52 165.0
Sain9g01663 . 1 70 MADS-box Transcription Factor family AT2G14210 78.571 3.09e-34 114.0
Sain9g01708 . 1 238 MADS-box Transcription Factor family AT2G22540 56.79 8.47e-83 246.0
Sain9g02980 . 9 252 MADS-box Transcription Factor family AT4G18960 71.084 1.41e-119 339.0
Sain9g03287 ACH 1 209 MADS-box Transcription Factor family AT2G45660 61.215 7.39e-81 239.0
Sain9g03650 . 95 164 MADS-box Transcription Factor family AT5G65060 32.857 5.16e-06 43.1
Sain9g03651 . 2 71 MADS-box Transcription Factor family AT2G45650 67.143 1.04e-26 95.5
Sain9g03861 . 1 169 MADS-box Transcription Factor family AT5G65070 43.889 1.99e-40 135.0
Sain10g03461 . 3 167 MADS-box Transcription Factor family AT5G60440 46.512 2.79e-45 150.0
Sain10g03719 . 1 244 MADS-box Transcription Factor family AT1G24260 72.8 5.28e-119 338.0
Sain10g04087 . 2 183 MADS-box Transcription Factor family AT1G65330 40.659 2.16e-43 146.0
Sain10g04088 . 6 159 MADS-box Transcription Factor family AT5G48670 45.455 2.05e-42 144.0
Sain10g04090 . 1 187 MADS-box Transcription Factor family AT5G48670 61.497 7.91e-69 213.0
Sain10g04260 . 95 190 MADS-box Transcription Factor family AT5G65060 28.125 2.17e-07 46.2
Sain10g04261 . 1 75 MADS-box Transcription Factor family AT2G45650 66.667 4.03e-27 98.2
Sain11g00223 . 3 116 MADS-box Transcription Factor family AT1G65300 29.661 2.01e-12 61.6
Sain11g00930 . 3 161 MADS-box Transcription Factor family AT5G60440 48.428 2.82e-45 149.0
Sain11g00931 . 3 161 MADS-box Transcription Factor family AT5G60440 46.914 9.45e-44 145.0
Sain11g00935 . 61 264 MADS-box Transcription Factor family AT2G24840 45.161 3.98e-62 193.0
Sain11g00936 . 3 168 MADS-box Transcription Factor family AT5G60440 57.831 1.24e-60 189.0
Sain11g01021 . 45 164 MADS-box Transcription Factor family AT1G29960 38.168 2.21e-18 75.9
Sain11g01377 . 95 190 MADS-box Transcription Factor family AT5G65060 28.125 7.59e-06 42.0
Sain11g01378 . 1 59 MADS-box Transcription Factor family AT2G45650 71.186 5.99e-26 94.0
Sain11g01435 ACH 3 171 MADS-box Transcription Factor family AT5G60440 37.931 8.66e-35 124.0
Sain11g01617 . 1 194 MADS-box Transcription Factor family AT5G65070 38.384 7.28e-40 135.0
Sain11g01618 . 1 75 MADS-box Transcription Factor family AT5G15800 61.333 3.17e-26 94.7
Sain11g01619 . 1 194 MADS-box Transcription Factor family AT5G65070 37.374 9.09e-39 130.0
Sain11g01620 . 1 160 MADS-box Transcription Factor family AT5G65070 40.854 7.05e-36 124.0
Sain11g01621 . 1 194 MADS-box Transcription Factor family AT5G65070 35.859 1.64e-37 127.0
Sain11g01622 . 1 148 MADS-box Transcription Factor family AT5G65070 43.421 2.48e-36 122.0
Sain11g01635 . 1 59 MADS-box Transcription Factor family AT2G45650 71.186 5.99e-26 94.0
Sain11g01886 . 1 250 MADS-box Transcription Factor family AT3G02310 62.353 1.32e-103 299.0
Sain11g01888 . 1 177 MADS-box Transcription Factor family AT1G69120 73.446 1.49e-92 271.0
Sain11g02567 ACH 1 240 MADS-box Transcription Factor family AT2G22540 60.996 1.23e-92 270.0
Sain11g02568 . 1 240 MADS-box Transcription Factor family AT2G22540 61.25 2.20e-95 277.0
Sain11g02705 . 63 250 MADS-box Transcription Factor family AT3G02310 50.0 4.91e-53 168.0
Sain11g03412 ACH 63 215 MADS-box Transcription Factor family AT2G24840 49.032 2.09e-43 143.0
Sain11g03413 . 61 264 MADS-box Transcription Factor family AT2G24840 44.7 8.49e-61 189.0
Sain11g03415 . 3 169 MADS-box Transcription Factor family AT5G60440 55.952 4.59e-57 181.0
Sain11g03653 . 63 250 MADS-box Transcription Factor family AT3G02310 50.0 4.91e-53 168.0
Sain12g00436 ACH 9 164 MADS-box Transcription Factor family AT1G29960 48.718 1.51e-52 163.0
Sain12g01399 . 2 145 MADS-box Transcription Factor family AT5G60440 37.671 9.61e-22 87.8
Sain12g01661 . 63 250 MADS-box Transcription Factor family AT3G02310 48.969 4.61e-51 162.0
Sain12g01668 . 45 159 MADS-box Transcription Factor family AT1G29960 40.833 3.63e-22 85.5
Sain13g00185 . 37 157 MADS-box Transcription Factor family AT1G29960 31.081 7.49e-12 61.2
Sain14g00700 ACH 1 187 MADS-box Transcription Factor family AT5G60440 40.0 4.54e-39 135.0
Sain14g00701 ACH 3 187 MADS-box Transcription Factor family AT5G60440 40.426 3.36e-38 132.0
Sain14g01540 . 1 83 MADS-box Transcription Factor family AT2G45660 60.241 3.80e-27 100.0
Sain14g01554 . 1 236 MADS-box Transcription Factor family AT5G13790 40.873 3.14e-56 179.0
Sain16g00175 . 37 164 MADS-box Transcription Factor family AT1G29960 30.597 2.33e-12 60.8
Sain16g00619 ACH 1 137 MADS-box Transcription Factor family AT5G55690 35.417 4.91e-24 95.9
Sain10000533.1g00002 . 1 61 MADS-box Transcription Factor family AT3G05860 40.984 7.07e-13 59.7
Sain10001005.1g00002 . 142 221 MADS-box Transcription Factor family AT3G02310 40.964 8.93e-12 57.0
Sain10001244.1g00008 . 142 221 MADS-box Transcription Factor family AT3G02310 40.964 8.93e-12 57.0