AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00457 ATGGCGATCATAGAACTGCAAGTACATATAGATTGTGCCGGCTGTGAGAACAAGATCCGAAAATCTCTTCAAAAACTCAAAGGGGTGGAGAACGTAGAAATAGACATGGGGTTACAGAAGGTGACGGTGACGGGATACGCCGACGAGAAAAAGGTGTTGAAAACGGTGAGAAGAACCGGCCGGCGAGCTGAGATCTGGAATGTACCCTACAATCCCGACATCCGCAGCCATAACTACAACGTTAATCAGTATGCTCAACAACAACAACAGCAGCAGCAGCAGAATGGTAATGGTGGTTCCGGCACCGCTGGCCCCACGGCGACGTTCTACACACGGCAGCCATCTTCGTCTTCATCGTACAACTACTACAAGCATGGTTACGATGACCACCAGAGTTATAACCCGGTCCAGTCCTCCGGTTTAATTGGACACCAGACCGGTGCTGCTTTTAGTGATGAAAATACCAATGCTGCCTGTAACATCATGTAG 489 49.08 MAIIELQVHIDCAGCENKIRKSLQKLKGVENVEIDMGLQKVTVTGYADEKKVLKTVRRTGRRAEIWNVPYNPDIRSHNYNVNQYAQQQQQQQQQNGNGGSGTAGPTATFYTRQPSSSSSYNYYKHGYDDHQSYNPVQSSGLIGHQTGAAFSDENTNAACNIM 162
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00457 162 SUPERFAMILY HMA, heavy metal-associated domain 4 67 IPR036163 GO:0046872(InterPro)
Sain12g00457 162 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 162 IPR045181 GO:0046872(InterPro)
Sain12g00457 162 Pfam Heavy-metal-associated domain 8 61 IPR006121 GO:0046872(InterPro)
Sain12g00457 162 CDD HMA 5 64 IPR006121 GO:0046872(InterPro)
Sain12g00457 162 Gene3D - 2 65 - -
Sain12g00457 162 ProSiteProfiles Heavy-metal-associated domain profile. 1 64 IPR006121 GO:0046872(InterPro)
Sain12g00457 162 MobiDBLite consensus disorder prediction 84 115 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00457 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:9903944 Sain9g02932 Sain-Chr9:176786003 dispersed
Sain Sain-Chr12:9903944 Sain9g02104 Sain-Chr9:128332878 transposed
Sain Sain-Chr12:9903944 Sain4g02737 Sain-Chr4:126929776 transposed