AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00464 ATGGGGAAAAAACGAGAAAGGCATCAAAATCCAGAACCCTTCTTAACCGATGACACCAACAAATCCGTCTCCAAGAAGCGCAACAAACCCGCTAAGCAACACCAGAGCGAAGAAAAGCTTATATCGGCGGGCATTAGCTCCAAGATTTTGAAGGAGGCTTTAATTCAGCAGAAGGAGATTCAGGAAGAGACAGATGCCGAAAACCCTAATAACATTGTTTTCCCGGAAGAACCTGTTACTCAGGCTCAAGTAGATGAAGACGATGATGTTGACAACTTTGCTGGATTCTCTGATAATCATAGCCAGTTTGGCGGTTGTGAGGAAGAAATCAACGAGGATGAAGAGAAGTTATTGGAAGCCTTCTTCTCCAAAGATGCTCGACCTCAGCGCACATTGGCTGATGTCATTGTGCAGAAGATCAAAGAAAAAGATACAGTATCTTCAGGTTTATCTGCAGGAGTGCAACCTCTGCCAAAATTGGATGATTCCATCATAGAAATATACAAGAGTGTTGGAGAGATTTTCAAGAAATATACTTCTGGAAAATTGCCATTGGCCTTCAAAAGCATACCAGCGAAGCAACACTGGGAGGAACTTCTGTACTTGACAGAGCCCGAGAAATGGTCGCCGAATGCAATGTACCAAGCCACCAGAATCCTTGCTTCCAATATGAGTTCAAAGAAAGTGGAGCGGTTTTACAAGTTTGTTTTACTCCCTCGTGTTAGACAAGATATACGGAAGAACAAGAAACTTCATTTCGCATTATATCAAGCTTTGAAAAAGGCTGTATACAAACCAGCTGCCTTCAATAAAGGAGTTTTGTTTCCGATATGCGAGTCAAGGACTTGCAATTTGAGAGAAGCTGTTATTATTGGAAGCATTCTTCAAAAGGTCTCTATTCCACCACTTCATTCCAGTCTTGCGTTAATGAAACTTGCAGAAATGGAGTATGGTGGCACAACAAGCTATTTTATAAAGTTGTTAGTTGAGAAGAAATATGCATTGCCATATCGAGTTGTTGATGCAATGGTTGCACATTTTATGAGATTTTGTGAGGATTCGAGGGATATGCCTGTGATCTGGCATCAGTCGCTTCTTGCATTTATGCAACGGTACAAACATGAACTGACAAAAGATCAAAAAGAGGAGCTTAATTATCTTGTGAAGAAGCAGAGACATAAAATGGTGACACCTGAAATTCTAAGAGAACTGAATAATAGCCGTAACCGTGGAGAGAAGGAGGACGACCTTATGTCTATACCTTCCCCTATTTCTGTGATCAATAAAACTATAGAGGAAGACAGATTTGATATTCCAGAAGTACCCATGGAAGAGGATTAA 1341 40.87 MGKKRERHQNPEPFLTDDTNKSVSKKRNKPAKQHQSEEKLISAGISSKILKEALIQQKEIQEETDAENPNNIVFPEEPVTQAQVDEDDDVDNFAGFSDNHSQFGGCEEEINEDEEKLLEAFFSKDARPQRTLADVIVQKIKEKDTVSSGLSAGVQPLPKLDDSIIEIYKSVGEIFKKYTSGKLPLAFKSIPAKQHWEELLYLTEPEKWSPNAMYQATRILASNMSSKKVERFYKFVLLPRVRQDIRKNKKLHFALYQALKKAVYKPAAFNKGVLFPICESRTCNLREAVIIGSILQKVSIPPLHSSLALMKLAEMEYGGTTSYFIKLLVEKKYALPYRVVDAMVAHFMRFCEDSRDMPVIWHQSLLAFMQRYKHELTKDQKEELNYLVKKQRHKMVTPEILRELNNSRNRGEKEDDLMSIPSPISVINKTIEEDRFDIPEVPMEED 446
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00464 446 PANTHER BYSTIN 1 446 IPR007955 GO:0005730(PANTHER)|GO:0005737(PANTHER)|GO:0006364(PANTHER)|GO:0030515(PANTHER)|GO:0030688(PANTHER)
Sain12g00464 446 MobiDBLite consensus disorder prediction 1 36 - -
Sain12g00464 446 Gene3D - 177 400 - -
Sain12g00464 446 MobiDBLite consensus disorder prediction 1 40 - -
Sain12g00464 446 FunFam Bystin (51.6 kD)-like 181 398 - -
Sain12g00464 446 Pfam Bystin 128 413 IPR007955 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00464 K14797 essential nuclear protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:10217227 Sain8g02455 Sain-Chr8:155701927 dispersed