AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00475 ATGGTGGATGTGGATGGTAAAGAGAAGTGTAGTAATGGCGGCGATAAGAAGAGGAACAACAACGACAATAGGTGGAGGTGGCGGAGAGTTGTTGGAGCTGTGATCGCTGTTTTAGCTGCCATATATCTCAATCCTTGGTGTCATTCGCACACAATTTCCTTCCTCCATAAACCCTACCTCTGTTCTGAGGATACATGTAAATATACAGGCATTGTTGAGGACTGCTGTTGTGACTATGAAAGCGTTGACAATGTTAATGGAGCAGTTTTACATATCTTGTTGAAAGAGCTTGTTGCGACTCCTTTCTTCCGATATTTCAAGGTCAAGTTATGGTGTGATTGCCCCTTCTGGCTTGATGATGGTATGTGCCGCCTTCGTGATTGCAGTGTATGTGAGTGTCCAGAACATGAATTCCCTGAAATCTTTAAGAAGCCACTTCTGCATATTCTTCCAAAAGATGACCCTGTATGTCAAGAGGGAAACCCGGTGGCTACCGTTGATCGTACCCTAGATGATAAGTCGTTTAGAGGCTGGGTAGAAATAGATAATCCATGGACTCATGATGATGAAACCGACAATGGTGAAATGACGTATGTAAATCTGCAACTGAACCCCGAACGTCATACGGGTTACACAGGGCCATCGGCAAGAAGAATATGGGATGCTATATACTCGGAAAACTGCCCAAGATATGCATTTGGAGAGGTGTGCCCAGAGAAGAAAGTACTATACAAGTTAATATCTGGTATGCACTCCTCAATTTCAATCCACATAGCTGCTGATTATCTGCTTGATGAGACTACCAATCAGTGGGGTCCAAATGATAAATTGATGCATGACCGTGTACTGAAACATCCTGATCGCGTGCAAAACTTGTACTTCACGTTCCTATTCGTTCTTAGAGCTGTAACAAAAGCAGCTGCTTACTTGGATCAGGCTGAGTATGACTCCGGTAACCATGCAGAGGATCTGAAAGCCCAAGCTTTGATACGAAAACTGGTTCACAATCCCAAATTGCAGGCTGCATGCGCTCTTCCATTTGATGAGGCTAAAATGTGGCAAGGCCAAGGTGGACCCATACTCAGACAACAAACCCAAAATCAATTTCGGAACATAAGTGCACTGATGGACTGTGTAGGGTGCGAGAAGTGTCGTCTTTGGGGAAAACTTCAGGTTCTCGGCCTTGGAACTGCTTTAAAAATTCTCTTCTCTGTGGATGATCAAGGAAACCCAGACCCACACCTGCCGTTACAAAGAAATGAAGTGATTGCTCTAATTAATCTACTAAATCGGCTATCGGAATCTCTTATATATGTTACTAATGGGGTCTTTAGTGCCTTGGGCTAA 1347 43.8 MVDVDGKEKCSNGGDKKRNNNDNRWRWRRVVGAVIAVLAAIYLNPWCHSHTISFLHKPYLCSEDTCKYTGIVEDCCCDYESVDNVNGAVLHILLKELVATPFFRYFKVKLWCDCPFWLDDGMCRLRDCSVCECPEHEFPEIFKKPLLHILPKDDPVCQEGNPVATVDRTLDDKSFRGWVEIDNPWTHDDETDNGEMTYVNLQLNPERHTGYTGPSARRIWDAIYSENCPRYAFGEVCPEKKVLYKLISGMHSSISIHIAADYLLDETTNQWGPNDKLMHDRVLKHPDRVQNLYFTFLFVLRAVTKAAAYLDQAEYDSGNHAEDLKAQALIRKLVHNPKLQAACALPFDEAKMWQGQGGPILRQQTQNQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVDDQGNPDPHLPLQRNEVIALINLLNRLSESLIYVTNGVFSALG 448
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00475 448 PANTHER ERO1-RELATED 34 440 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(InterPro)|GO:0015035(PANTHER)|GO:0016972(InterPro)|GO:0034975(PANTHER)|GO:0034975(InterPro)|GO:0071949(InterPro)
Sain12g00475 448 PIRSF ERO 29 444 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Sain12g00475 448 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 91 437 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Sain12g00475 448 SUPERFAMILY ERO1-like 77 440 IPR037192 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00475 K10950 ERO1-like protein alpha [EC:1.8.4.-]
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Event-related genes

Select Gene_1 Gene_2 Event_name
138747 Sain12g00475 Sain13g02323
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:10389811 Sain4g00723 Sain-Chr4:19897618 dispersed
Sain Sain-Chr12:10389811 Sain13g02323 Sain-Chr13:130975013 wgd