AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00481 | ATGATGCTTGGAGTTATGAAGAAGGTGCCTTTCAATGGCGCCGTCGTTGGCCGTCGATGGATGAGCATTAGCAACACCGTAATGAGTTTTGGAGACGGTAGCCATGGTGCTCTTGGCTTACCAACATCCATCACTGGCATCGGTTCCCACGCCTATGAACCAACTCCAATCCCATCCCTACCTCCTGACGTTTCCAGCATCGCCGCCGGTCACCACCACTCTCTCGCCGTAACTTCTCAAGGCCACCTCTGGTCTTGGGGCCGCAATGTCGAATCCCAGCTTGGGCGTGGCCTTCATTCCCCTAGAGAAACATGGGTCGAACCACAAAGAATAGAGGGGTTGATTGGTGTTCAATCTGCATTTGCATCAGGTGTTGTTTCTGCAGCCATTGGAGATGATGGGTCCTTGTGGGTTTGGGGGAAATCGAATCGTGGTCAATTGGGTCTCGGAGAAGGGATCACAGAGGCTGTTCTTCCTTCCAGGATAAAAGCTGTTGCTAAAGAAGAAATAATTAAGGTTTCATTTGGATGGGGACATGCTCTTGCACTTGCCAAAAATGGAAAGTTGTTTGGTTGGGGTTATTCAGCAGATGGTAGATTAGGAAAGAGAGGAGTTGGGGGGGTTTCACCACTCGATTCAAGGGCTAATTTGTCTTTTTCAAGTTTGAAGCTTGAAGTTGCTGAGAAAGTAGTCTTGGAAGCCATGGATAAGGAGAAGAATATGCCTATAATCTGGGAGCCATGTTTGATTGATGAGCTAGAAGGTGTTGAAGTTGCCGATATCTCATGTGGGCTTGACCACACCTTGGTTCTTCTACGTGATGGAACCTTACTCAGTGGTGGAAGCAATGTTTATGGGCAATTGGGTAGATCAAGTCAAGATTTGGAATTGCTTCCAGTTGACATAATTGTCCACCCTGTTTCTATTGCTTCAGGACTAGGCCATTCTTTGGCGATATGCCAGATCCCATCTGCAGATGGTGGTAGAGGCATCTCCGGCATCTTTTCATGGGGTTGGAGTCAGGATTCTCAGCTCGGTAGAGAAGGTCCAGCAAACATCCCACTCCTCGTGGATGCACTTTTAGGGGAAAATCTGTTATCAGTGGCAGGCGGGCGTGTCCACTCCATTGCTCTCACTTCCGATGGAGATATCTTTGCTTGGGGGTGTGGCAGAAATGGGAGGCTTGGTTTCGGCAGTTCTATGAACAAACCCGAACCCGAACCCATGTTGGTTGAGCTTTCAGAAGGTACTAAAGCTTTGCAAGCTGTTTCAGGCTTCGATCATAACCTGGTCCTGACTGGCTAA | 1305 | 48.51 | MMLGVMKKVPFNGAVVGRRWMSISNTVMSFGDGSHGALGLPTSITGIGSHAYEPTPIPSLPPDVSSIAAGHHHSLAVTSQGHLWSWGRNVESQLGRGLHSPRETWVEPQRIEGLIGVQSAFASGVVSAAIGDDGSLWVWGKSNRGQLGLGEGITEAVLPSRIKAVAKEEIIKVSFGWGHALALAKNGKLFGWGYSADGRLGKRGVGGVSPLDSRANLSFSSLKLEVAEKVVLEAMDKEKNMPIIWEPCLIDELEGVEVADISCGLDHTLVLLRDGTLLSGGSNVYGQLGRSSQDLELLPVDIIVHPVSIASGLGHSLAICQIPSADGGRGISGIFSWGWSQDSQLGREGPANIPLLVDALLGENLLSVAGGRVHSIALTSDGDIFAWGCGRNGRLGFGSSMNKPEPEPMLVELSEGTKALQAVSGFDHNLVLTG | 434 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00481 | 434 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 24 | 433 | IPR051210 | - | |
| Sain12g00481 | 434 | SUPERFAMILY | RCC1-BLIP-II | 26 | 408 | IPR009091 | - | |
| Sain12g00481 | 434 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 25 | 80 | IPR000408 | - | |
| Sain12g00481 | 434 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 133 | 183 | IPR000408 | - | |
| Sain12g00481 | 434 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 334 | 378 | IPR000408 | - | |
| Sain12g00481 | 434 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 381 | 432 | IPR000408 | - | |
| Sain12g00481 | 434 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 81 | 141 | IPR000408 | - | |
| Sain12g00481 | 434 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 382 | 434 | IPR000408 | - | |
| Sain12g00481 | 434 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 187 | 274 | IPR000408 | - | |
| Sain12g00481 | 434 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 332 | 381 | IPR000408 | - | |
| Sain12g00481 | 434 | Gene3D | - | 234 | 434 | IPR009091 | - | |
| Sain12g00481 | 434 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 64 | 93 | - | - | |
| Sain12g00481 | 434 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 258 | 287 | - | - | |
| Sain12g00481 | 434 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 261 | 271 | IPR000408 | - | |
| Sain12g00481 | 434 | PRINTS | Chromosome condensation regulator RCC1 signature | 189 | 203 | IPR000408 | - | |
| Sain12g00481 | 434 | PRINTS | Chromosome condensation regulator RCC1 signature | 377 | 398 | IPR000408 | - | |
| Sain12g00481 | 434 | PRINTS | Chromosome condensation regulator RCC1 signature | 173 | 189 | IPR000408 | - | |
| Sain12g00481 | 434 | PRINTS | Chromosome condensation regulator RCC1 signature | 83 | 99 | IPR000408 | - | |
| Sain12g00481 | 434 | PRINTS | Chromosome condensation regulator RCC1 signature | 64 | 77 | IPR000408 | - | |
| Sain12g00481 | 434 | PRINTS | Chromosome condensation regulator RCC1 signature | 134 | 150 | IPR000408 | - | |
| Sain12g00481 | 434 | PRINTS | Chromosome condensation regulator RCC1 signature | 26 | 42 | IPR000408 | - | |
| Sain12g00481 | 434 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 275 | 322 | IPR000408 | - | |
| Sain12g00481 | 434 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 134 | 186 | IPR000408 | - | |
| Sain12g00481 | 434 | Gene3D | - | 14 | 220 | IPR009091 | - | |
| Sain12g00481 | 434 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 67 | 77 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00481 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 138749 | Sain12g00481 | Sain13g02319 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:10468342 | Sain3g01313 | Sain-Chr3:57252612 | dispersed | |
| Sain | Sain-Chr11:32846416 | Sain12g00481 | Sain-Chr12:10468342 | wgd | |
| Sain | Sain-Chr12:10468342 | Sain13g02319 | Sain-Chr13:130945189 | wgd |