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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00504 ATGGCAAAGCAAAAGATCGTGGTGAAGGTAGCCATGCACAGCGAGAAGAAAGCTCGTAAGGCTCTTCAGATCGTTGTTAGTGTTTGCGGTGTGGAATCAGCAGCCTTCGAGGGTTCAGATAAAGACCAGATAGCGGTGATCGGAGAAGGAATTGACTCGGTGAAACTGACAGCTAAGCTAAGGAAATGTGTAGGACACACAGATCTGGTGAGTGTTGGTCTGGAGAAAGAGAAGGAGAAGGAGGACGATAAATCGAAGGCCACCATGGAATTTTGTCCGTACCAGTACTACTATGGTTGCTATGGTGCGCCCTACTATGCATACAGGATGTGA 333 47.75 MAKQKIVVKVAMHSEKKARKALQIVVSVCGVESAAFEGSDKDQIAVIGEGIDSVKLTAKLRKCVGHTDLVSVGLEKEKEKEDDKSKATMEFCPYQYYYGCYGAPYYAYRM 110
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00504 110 Gene3D - 1 78 - -
Sain12g00504 110 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 47 4 102 IPR042885 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00504 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:11057193 Sain12g00504 Sain-Chr12:11314553 dispersed
Sain Sain-Chr12:11083630 Sain12g00504 Sain-Chr12:11314553 dispersed
Sain Sain-Chr12:11314553 Sain12g00508 Sain-Chr12:11423486 dispersed
Sain Sain-Chr12:11314553 Sain12g00507 Sain-Chr12:11402353 proximal