AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00521 ATGAGTGGGGGTAGGGTTTCCATTCCAAACAATGTAAGGAAGACGATCCAGAACATCAAGGAGATCACAGGTAATCACAGTGAAGATGAGATATATGCAATGCTCAAAGATTGTTCCATGGATCCAAACGAGACCGCACAGAAGCTCCTCTTGCAAGATCCATTTCATGAAGTTAAGAGGAAGCGTGATCGCAAGAAGGAGAATCTGAATAAAGAATCTACAGAGCCTAAATGGAGACCTGGGATGCAGGGGCGGGGGAATAGGGGTGGCCGGGGGAACTACTCATCCCGCCACAGTTCTAATGATGCAGGTGGTGGAAGGGCACCTCTATCTGCAAAGGAGAATGGAATCAATCAAGGTTCAGAGGATCGTACAGTTGCGTCAATGCCTCAGGGTCAGAAGAATAAAGAGACATTTGCTGTTGCAAGCTCTTCCCGTGCTGTCGCCGATGGTTCATTTGATATATCTTCGTCAGTTGGAAGTGATAAGAAGCCATCTGAAGTGACTGTATCTACTGCGAGTAGTAAGATGGAGGGTACAGTGACACAACTTCCTCCTATTGAGGCGAGTAAGAGCACCACCGTTGCCTTGGGGTCTGGGAGTGCACATGGGCCGCTCATGTCGAGTTCCAATATACCATCACCTTCACCAGGGGTCTATTTGTCTGATTCAGATCCTATTTTGATGCCCTCACAAGATTCGCGGTTCCCAGTGGGTACGATCAGACGTGAAGTTGGTTGTCAGCGAACTCCAGTTGAACAGATTCATGAGACCCCCCACGAGATCAAATCAGCTGCTGCTGGTTCTGAGGGTGGGAACTCCTCCATGCAAGGGAAGGCACCCGGTGAGCTTCAAGGAGTGAGCAAGAGTTTGGTTTTGGAGTCTTCACGACCGGGAACATCTTCTCACGTCTCCTTTTCCATTGCCAGGCCTTCCTCAAACTATAATAATAGGCTGCAACAAGCAATTGGGCAGCAAAAAGTGGGCCCTGGTATGGAATGGAAACCAAAACCAACAAATCCTGTTCTTGCTCACGGGACTGGGTCCAGTGAGTCAATTAAGGTGCCTGCGGTTTCAACTAAAGGTCATACTCCGACCCAATCTGCATCCAGTAATCTTGATTCAAAGGATGCTACGAGTGAACTCGAGAGGAAGCTCGAGGAGTCGCACATTTCAGATGATCAACATGTTATTATCCCAAATCACCTTCATGTTCCTGAAGCCGAGAAACTCGGATTCTGCTTCGGGAGTTTCGATGCCAGTTTTGGTTTGAATGCAAGCTCCTCAAATGGTCCGGTGACCGACAAGAGTTCCGAGGCTTCTGAGGAGGTTGATGAAAGTATAGAGGAGCAGTCCAGAAACCAAAATGCTTTGGCAACGGCTGATGAAAGAGATCACCGTGACCGTCCTACGTCCTTTGGTAACGTACCTGAGAGTTTACCAGCTGAAGGCGATGTCTCATCAAATGCAGCCCCCGAGTACAGAGAATCCAAGCCAGAGACTTCACTCCCGACTTCAGGCCATCAATACCCAGTTGTTCATACATCTCCTAACTTCAGTTTCGGGTTCATGCCGCCAATGATTGGGAGCCAGCTTACGTCTTTTGAAAGCAACGAGTCTCAATCTCGTGATGGTTCTCACGTCCCAAGCTTCGTAGTTCAGCAACCGTTTGATCCAGCAAGCTATTATGCTCAATTCTATCGTTCTGGTGCTGATAATGATGGTCGTTTGTCACCCTTCCACTCTACCGGGGTTCCAACCAAATATAACGGAAATGTTGCAGTGTTATCTCCACAGGCTTCTCAATCTTCTCAAGAGGTTGGGAACTCGCTAATGTTGTCTGCTGCTGGTCCAACACCGATAGCCACACAAACTGCTGGTGTTATGCAAAACTCCATAGCAGTCACTCAGCAACCATTGCCGATTTTCAGGCAGCCGCCAACTGGGGTCCATTTGCCCCATTATCCTCCAAATTATATCCCATATGGTCCATATTTCTCCCCCTTTTACGTTCCTCCGCCAGCTATACATCAGTTTTTGAGCAACGGTGCATTCCCTCAACAACATCAAGGTGGCAGTATGTATCCAGCTCCACCAGTGGCAACTCCTAAATACCCACTTCCGCAATACAAGCCGGGAAGTAATACGGGTAACTCGACACACATGGGAATGGCTGGAAGCTATGGACCGTATGGTTCACCCCCTGCAAGTTATAATCCTGGCTCGGCTACTACAGCTGGAAATTCGACCTCCAATGAGGACCTTGGTGGGTCCCAGTTCAAAGAAAGCAATGTATACATCACTGGACAGCAGAGTGAAGGGTCGGGTGTATGGATCGCTGCACCTGGTCGAGACATGGCTAGTTCTTTCTATAATCTTCCTCAAGGTGGTCAAGTCGCATACACCCCAACACAAGCGGGCCATGGCACGTTTGCTAGTATTTATCACCCTGCACAACCAGTAACCACCGGAGCTGTTCACCCACTTCTCCAACAGTCCCAAACACTGGCGGCAGCGGGTGGTGGTGGTGTTGACATGGCGGCAGGTGGTGGTGTGTATCAGCAACCGCAACCTGCTCAAATAAACTGGCCTAATAACTATTGA 2604 48.89 MSGGRVSIPNNVRKTIQNIKEITGNHSEDEIYAMLKDCSMDPNETAQKLLLQDPFHEVKRKRDRKKENLNKESTEPKWRPGMQGRGNRGGRGNYSSRHSSNDAGGGRAPLSAKENGINQGSEDRTVASMPQGQKNKETFAVASSSRAVADGSFDISSSVGSDKKPSEVTVSTASSKMEGTVTQLPPIEASKSTTVALGSGSAHGPLMSSSNIPSPSPGVYLSDSDPILMPSQDSRFPVGTIRREVGCQRTPVEQIHETPHEIKSAAAGSEGGNSSMQGKAPGELQGVSKSLVLESSRPGTSSHVSFSIARPSSNYNNRLQQAIGQQKVGPGMEWKPKPTNPVLAHGTGSSESIKVPAVSTKGHTPTQSASSNLDSKDATSELERKLEESHISDDQHVIIPNHLHVPEAEKLGFCFGSFDASFGLNASSSNGPVTDKSSEASEEVDESIEEQSRNQNALATADERDHRDRPTSFGNVPESLPAEGDVSSNAAPEYRESKPETSLPTSGHQYPVVHTSPNFSFGFMPPMIGSQLTSFESNESQSRDGSHVPSFVVQQPFDPASYYAQFYRSGADNDGRLSPFHSTGVPTKYNGNVAVLSPQASQSSQEVGNSLMLSAAGPTPIATQTAGVMQNSIAVTQQPLPIFRQPPTGVHLPHYPPNYIPYGPYFSPFYVPPPAIHQFLSNGAFPQQHQGGSMYPAPPVATPKYPLPQYKPGSNTGNSTHMGMAGSYGPYGSPPASYNPGSATTAGNSTSNEDLGGSQFKESNVYITGQQSEGSGVWIAAPGRDMASSFYNLPQGGQVAYTPTQAGHGTFASIYHPAQPVTTGAVHPLLQQSQTLAAAGGGGVDMAAGGGVYQQPQPAQINWPNNY 867
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00521 867 MobiDBLite consensus disorder prediction 114 133 - -
Sain12g00521 867 MobiDBLite consensus disorder prediction 53 74 - -
Sain12g00521 867 PANTHER FLOCCULATION PROTEIN (DUF1296) 1 867 IPR044277 GO:0051082(PANTHER)
Sain12g00521 867 MobiDBLite consensus disorder prediction 427 511 - -
Sain12g00521 867 MobiDBLite consensus disorder prediction 154 234 - -
Sain12g00521 867 MobiDBLite consensus disorder prediction 154 218 - -
Sain12g00521 867 MobiDBLite consensus disorder prediction 52 133 - -
Sain12g00521 867 MobiDBLite consensus disorder prediction 343 376 - -
Sain12g00521 867 Pfam GBF-interacting protein 1 N-terminal 8 67 IPR009719 -
Sain12g00521 867 SUPERFAMILY UBA-like 8 70 IPR009060 GO:0005515(InterPro)
Sain12g00521 867 MobiDBLite consensus disorder prediction 250 283 - -
Sain12g00521 867 MobiDBLite consensus disorder prediction 326 390 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00521 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138759 Sain12g00521 Sain13g02295
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:3514095 Sain12g00521 Sain-Chr12:11756189 transposed
Sain Sain-Chr1:76302533 Sain12g00521 Sain-Chr12:11756189 transposed
Sain Sain-Chr7:124740703 Sain12g00521 Sain-Chr12:11756189 transposed
Sain Sain-Chr9:200764302 Sain12g00521 Sain-Chr12:11756189 transposed
Sain Sain-Chr12:11756189 Sain13g02295 Sain-Chr13:130282292 wgd