AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00532 ATGGCTCCGGCTGCAGCAGTGGATGGCTCCGATAAAATCAAGCCTAGAGATGTATGTATTGTTGGTGTTGCACGCACACCACTTGGTGGTTTTCTTGGTTCTCTTTCAACTTTACCAGCCACCAAACTTGGGTCCATAGCAATTGAATGTGCTCTAAAAAGGGCAAATGTTGATCCATCGCTTGTAGAAGAAGTTTATTTTGGAAATGTTCTTGGTGCCAATTTGGGGCAAGGTCCGGCCAGACAAGCAGCGTTGGGTGCAGGAATCCTTAATACAGTGGTCTCTACATCTGTAAACAAAGTTTGCGCATCAGGGATGAAAGCAACCATGTTGGCCGCACAGAGTATCCAATTGGGTCAAAATGATATAGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGTCCCCAAATATATTGCAGAAGCAAGGAAGGGATCTAAGTTTGGACATGATACTCTTGTTGATGGGATTCTGAAAGATGGGTTGTGGGATGTTTTCAACGATTTTAAGATGGGGAACTGTGCTGAAATATGTGCAGATACACATGGAATAACAAGAGAACAACAGGATGACTATGCCATTCAAAGCTTTGAGCGTGGTCTTGCTGCCCGAGATAGTGGTGCCTTTGCATGGGAAATAGCCCCTGTTGAAGTTCCTGGCCCAAGAGGAAGACCATCAACAATTGTTGACAAAGATGATGATTTGGCAAAGTTTGATGCTGCAAAGTTGAGAAAGCTGCGTCCAGCTTTCAAGGAGAATGGCGGCAGTGTTACTGCCGGCAATTCCTCTGGTATAAATGATGGTGCTGCTGCACTTGTCTTGGTTAGTGGGGAGAAGGCACTTGAGCTTGGGTTGCATGTGATTGCGAAGGTTTCCGGGTATGCTGATGCTGAACAGGCACCTGAGTTATTTACAACCACCCCAGCCCTTGCTATACCGAAGGCTATTTCAAGAGCTGGATTAGATGCTTCTCAAATAGATTTCTATGAAATCAATGAAGCATTTGCTGTTGTGGCTCTTGCAAACCAGAAACTACTTGGTTTGGATTCAGCAAAGCTTAATGTACATGGTGGTGGTGTGTCATTGGGACATCCTCTAGGTTGCAGTGGTGCCCGTATCTTGGTCACTCTTTTGGGGGTTTTGAAGCAGAAAGGCGGGAAATACGGAGCAGCAGGTGTTTGCAATGGAGGTGGAGGTGCGTCAGCGTTTGTGGTAGAACTTGTTTAA 1227 45.64 MAPAAAVDGSDKIKPRDVCIVGVARTPLGGFLGSLSTLPATKLGSIAIECALKRANVDPSLVEEVYFGNVLGANLGQGPARQAALGAGILNTVVSTSVNKVCASGMKATMLAAQSIQLGQNDIVVAGGMESMSNVPKYIAEARKGSKFGHDTLVDGILKDGLWDVFNDFKMGNCAEICADTHGITREQQDDYAIQSFERGLAARDSGAFAWEIAPVEVPGPRGRPSTIVDKDDDLAKFDAAKLRKLRPAFKENGGSVTAGNSSGINDGAAALVLVSGEKALELGLHVIAKVSGYADAEQAPELFTTTPALAIPKAISRAGLDASQIDFYEINEAFAVVALANQKLLGLDSAKLNVHGGGVSLGHPLGCSGARILVTLLGVLKQKGGKYGAAGVCNGGGGASAFVVELV 408
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00532 408 NCBIfam acetyl-CoA C-acyltransferase 20 406 IPR002155 GO:0016747(InterPro)
Sain12g00532 408 SUPERFAMILY Thiolase-like 288 407 IPR016039 GO:0016746(InterPro)
Sain12g00532 408 Pfam Thiolase, C-terminal domain 286 406 IPR020617 GO:0016747(InterPro)
Sain12g00532 408 ProSitePatterns Thiolases signature 2. 354 370 IPR020613 GO:0016747(InterPro)
Sain12g00532 408 SUPERFAMILY Thiolase-like 17 285 IPR016039 GO:0016746(InterPro)
Sain12g00532 408 Gene3D - 14 407 IPR016039 GO:0016746(InterPro)
Sain12g00532 408 ProSitePatterns Thiolases active site. 389 402 IPR020610 GO:0016747(InterPro)
Sain12g00532 408 FunFam acetyl-CoA acetyltransferase, mitochondrial 13 408 - -
Sain12g00532 408 Pfam Thiolase, N-terminal domain 18 277 IPR020616 GO:0016747(InterPro)
Sain12g00532 408 CDD thiolase 20 406 IPR002155 GO:0016747(InterPro)
Sain12g00532 408 PANTHER ACETYL-COA C-ACYLTRANSFERASE 17 407 - GO:0003985(PANTHER)|GO:0005739(PANTHER)|GO:0006635(PANTHER)
Sain12g00532 408 PIRSF Ac-CoA-Ac-transf 12 408 IPR002155 GO:0016747(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00532 K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
138763 Sain12g00532 Sain3g00493
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:11897607 Sain1g01720 Sain-Chr1:107486510 dispersed
Sain Sain-Chr12:11897607 Sain3g00493 Sain-Chr3:12022222 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g00507 . 231 296 AACT gene family AT5G47720 75.758 1.01e-27 101.0
Sain1g01720 . 8 405 AACT gene family AT5G47720 78.392 0.0 654.0
Sain3g00493 ACH 1 405 AACT gene family AT5G47720 76.471 0.0 651.0
Sain12g00532 ACH 1 405 AACT gene family AT5G47720 76.225 0.0 645.0