AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00533 ATGGCGGCAATACTGGCTTCTAACAGCTGCTATTGCCGTGATGTGCAATTGGTAAATCAAGGGAGAACAACGGACAATCTCAGCTTCTCAAGATCAATTTCTACCCTGAAGTTGGATAGGCATGACTGTACTTTGCCTAAAGTGGAGAGGTTTCACAGGTTTCATGTTGAGATGCAACAGACAGAATCACCCCTGAAATCTGGTATCAATGGCCGACCTGCAAAGTTGGATACAAATGGTCAACCTGTGAAGTTGGGTGCCAATGGTAAACCGGTGAATTTGGGTGCCAATGGTCAACCTGTAAAGTTGGGAAGCAACGGTCAAGCAATCACGATGGTACCTACCAGTGAGGTGGTGAAAAACAAGCCTCTATCCAAACAAAGAGCAGGGGTAGTAAATGGATCAACACAAGTTGTTAATGGAACAAGTATTGTTAAGACAGCAACCACTCCGGCCCCTGTTAAATCTGTAAAAATTAGAGAACCCACAGGATTTCCACCTTCTGAAGAATTGAAGGTCTTGCCATCAGATGAAAGTTTCAGCTGGGCAAATGAAAGTTATAATTCAGTACAAAGATCAATAGACGTGTGGTCTTTTGTTCTTTCTCTTCGTGTTCGTGTTCTCTTCGACAATGCAAAATGGGCGTATCCTGGAGGCTTCACAGAGGACAAACAGAAAATCAGAAGAAGGAAAACAGCTGCATGGTTAAGGGAGTGTGTGCTTCAACTTGGGCCAACCTTTATCAAACTTGGGCAGTTATCTTCAACAAGGTCAGATCTATTTCCACGTGAATTTGTTGATGAGCTCGCCAAGTTACAGGACAGAGTACCGGCCTTTTCACCAGCAAAAGCCAAAGGTTTCATAGAGAAAGAATTAGGAGCTCCAGTTGATGTAATCTTCAAGGAGTTTGAAGAACGACCAATTGCAGCTGCTAGTCTGGGTCAGGTACATCGTGCAATATTACATAATGGAGAAAAGGTAGTTATTAAAGTTCAAAGACCTGGTCTGAAGAAGCTTTTTGACATCGATTTACGAAATTTAAAGCTAGTTGCGGAATATTTTCAAAGAAGTGAATCTCTCGGTGGCCCGACACGGGACTGGATAGGCATCTATGATGAATGTGCAAAGATTTTGTACGAGGAGATTGATTACATAAATGAAGGGAAAAATGCTGATAGATTTCGTCGAGATTTTCGTAATATAAAGTGGGTCCGAGTGCCTCAAGTATTCTGGGATTATACGGCACAAAAGGTGCTGACATTGGAGTATGTTCCAGGCATTAAGATTAATAACTTAGATGCGATAAAAGAAAGGGGTTTCAGTCGATCCCAAATCTCTTCGCACGCCATTGAATCGTACTTGATTCAGATACTGAAAACAGGTTTCTTTCATGCTGATCCTCATCCTGGAAATCTTGCTATCGATGTGGATGAATCATTAATCTACTATGATTTTGGCATGATGGGGGAGATTAAGTCCTTCACAAGAGAAAGATTGATGGATCTTTTCTATGCAGTTTATGAAAAAGATGCGAAAAAGGTTATGAACAGTTTGATAAGTCTTGAAGCGCTTCAACCTACTGGAGACATGTCAGCAGTTAGGAGATCTGTTCAGTTCTTTTTGGATAATTTGCTGAGTCAGTCACCAGATCAGGAGACCACTTTGGCTGCAATAGGCGAGGATTTATTTTCTATAGCAACAGATCAGCCTTTCCGGTTCCCATCCACCTTCACATTTGTAATTAGGGCATTTTCCACTCTTGAAGGAATTGGCTACTCACTCGATCCAGATTTTTCATTCGTCAAGATTGCTGCGCCTTATGCACAGGAGCTGTTAGATCTCAAACAACAGCGGCGCAGTGGAACACAACTTGTCCAGGAAATACAAAAACAAGCCAATGACGCAAGATCATACACCATGTCGATGCCTTACAGAGTTCAGCGGATCGAAGAGTTTGTGAAACAACTAGAATCAGGAGATGTTAAACTTCGTGTCAGAGTTCTTGAGTCTGAACGAGCAGCTCGGAAGGCAACAATATTGCAAATGGCAACCTTATACACGGTTATTGGGGGTACACTCGTAAACATAGGGGTCACATTTAGCAGCCAAGGCAGCCAACTTATAGCAAATGGGTCATTTGTTGCTGCAGGTGTTTTCATAACCCTGCTCCTTAGGTCCATGCAAAGGGTGAAGAAGCTTGATAAAATTGAAAAGATGATATAG 2223 42.2 MAAILASNSCYCRDVQLVNQGRTTDNLSFSRSISTLKLDRHDCTLPKVERFHRFHVEMQQTESPLKSGINGRPAKLDTNGQPVKLGANGKPVNLGANGQPVKLGSNGQAITMVPTSEVVKNKPLSKQRAGVVNGSTQVVNGTSIVKTATTPAPVKSVKIREPTGFPPSEELKVLPSDESFSWANESYNSVQRSIDVWSFVLSLRVRVLFDNAKWAYPGGFTEDKQKIRRRKTAAWLRECVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPAKAKGFIEKELGAPVDVIFKEFEERPIAAASLGQVHRAILHNGEKVVIKVQRPGLKKLFDIDLRNLKLVAEYFQRSESLGGPTRDWIGIYDECAKILYEEIDYINEGKNADRFRRDFRNIKWVRVPQVFWDYTAQKVLTLEYVPGIKINNLDAIKERGFSRSQISSHAIESYLIQILKTGFFHADPHPGNLAIDVDESLIYYDFGMMGEIKSFTRERLMDLFYAVYEKDAKKVMNSLISLEALQPTGDMSAVRRSVQFFLDNLLSQSPDQETTLAAIGEDLFSIATDQPFRFPSTFTFVIRAFSTLEGIGYSLDPDFSFVKIAAPYAQELLDLKQQRRSGTQLVQEIQKQANDARSYTMSMPYRVQRIEEFVKQLESGDVKLRVRVLESERAARKATILQMATLYTVIGGTLVNIGVTFSSQGSQLIANGSFVAAGVFITLLLRSMQRVKKLDKIEKMI 740
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00533 740 CDD ABC1-ADCK3-like 271 518 - -
Sain12g00533 740 SUPERFAMILY Protein kinase-like (PK-like) 273 521 IPR011009 -
Sain12g00533 740 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 139 672 IPR050154 GO:0046467(PANTHER)|GO:0055072(PANTHER)|GO:1901031(PANTHER)
Sain12g00533 740 Pfam ABC1 atypical kinase-like domain 271 517 IPR004147 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00533 K03688 ubiquinone biosynthesis protein
Sain12g00533 K08869 aarF domain-containing kinase
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Event-related genes

Select Gene_1 Gene_2 Event_name
138764 Sain12g00533 Sain13g02289
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr11:181257641 Sain12g00533 Sain-Chr12:11906045 dispersed
Sain Sain-Chr12:11906045 Sain4g01159 Sain-Chr4:34819468 dispersed
Sain Sain-Chr11:72590951 Sain12g00533 Sain-Chr12:11906045 transposed
Sain Sain-Chr12:11906045 Sain13g02289 Sain-Chr13:130177790 wgd