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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sain12g00541	ATGGCGGATTCCGATAACGAATCAGGAGGTCACAACGCCGGCGTCGAGTTATCAGCGAGAGAACAGGACAGGTTCCTGCCAATTGCTAACGTGAGCCGGATCATGAAGAAGGCGTTGCCGGCAAACGCGAAGATCTCGAAGGATGCGAAGGAGACGGTACAGGAGTGCGTATCGGAGTTCATCAGCTTCATCACCGGAGAAGCATCCGACAAGTGCCAACGGGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTGTGGGCGATGACGACGCTAGGGTTTGAAGAATACGTTGAGCCTCTGAAGGTTTATTTGGCGAAATACAGGGAGATGGAAGGGGAGAAGACGACGATTGGAAGACCAGGTGAGAAGGACGGATCGTCTGGTGGCGGTGGTGGTGCGGCGGCAGGCGGCGGAGGGAGTGGTGGGGGTGTTAGTTCGTATAATGACGGTGGCGGAGGGATGTACGGAGGGATGCAGAATAACATGATGATGGGGCGGCACCACCAGCAGATGTATAATTCGGGTTCATATCATCAAATGGGTTTGGGTTTAGGGAGTCCGAACCCGAAGGGCAGTTTGGGCAGATCGGGCAGCATTGGCGGTGGAAGTGGTGGAGCTTCCACTGTGAAGCCTAGGTAG	642	55.14	MADSDNESGGHNAGVELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLAKYREMEGEKTTIGRPGEKDGSSGGGGGAAAGGGGSGGGVSSYNDGGGGMYGGMQNNMMMGRHHQQMYNSGSYHQMGLGLGSPNPKGSLGRSGSIGGGSGGASTVKPR	213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sain12g00541	213	ProSitePatterns	NF-YB-HAP3 subunit signature.	56	72	IPR003956	GO:0005634(InterPro)\|GO:0006355(InterPro)\|GO:0043565(InterPro)
	Sain12g00541	213	MobiDBLite	consensus disorder prediction	175	213	-	-
	Sain12g00541	213	MobiDBLite	consensus disorder prediction	113	141	-	-
	Sain12g00541	213	FunFam	Nuclear transcription factor Y subunit B-3	14	135	-	-
	Sain12g00541	213	Gene3D	Histone, subunit A	15	130	IPR009072	GO:0046982(InterPro)
	Sain12g00541	213	PRINTS	CCAAT-binding transcription factor subunit A signature	53	71	-	-
	Sain12g00541	213	PRINTS	CCAAT-binding transcription factor subunit A signature	72	90	-	-
	Sain12g00541	213	PRINTS	CCAAT-binding transcription factor subunit A signature	91	109	-	-
	Sain12g00541	213	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	12	162	IPR027113	GO:0000978(PANTHER)\|GO:0000981(PANTHER)\|GO:0001228(InterPro)\|GO:0006355(InterPro)\|GO:0006357(PANTHER)\|GO:0016602(PANTHER)\|GO:0016602(InterPro)
	Sain12g00541	213	SUPERFAMILY	Histone-fold	22	128	IPR009072	GO:0046982(InterPro)
	Sain12g00541	213	Pfam	Histone-like transcription factor (CBF-NF-Y) and archaeal histone	25	89	IPR003958	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sain12g00541	K08065	nuclear transcription Y subunit beta

Event-related genes

Select	Gene_1	Gene_2	Event_name
	138766	Sain12g00541	Sain3g00491

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Sain	Sain-Chr12:12073220	Sain9g00069	Sain-Chr9:1733916	dispersed
	Sain	Sain-Chr3:234478767	Sain12g00541	Sain-Chr12:12073220	transposed
	Sain	Sain-Chr10:74689397	Sain12g00541	Sain-Chr12:12073220	transposed
	Sain	Sain-Chr11:72621587	Sain12g00541	Sain-Chr12:12073220	transposed
	Sain	Sain-Chr14:27770600	Sain12g00541	Sain-Chr12:12073220	transposed
	Sain	Sain-Chr12:12073220	Sain3g00491	Sain-Chr3:11978856	wgd

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sain3g00491	ACH	1	126	CCAAT-HAP3 Transcription Factor family	AT4G14540	89.683	4.12e-80	234.0
	Sain3g01329	.	48	145	CCAAT-HAP3 Transcription Factor family	AT2G47810	74.49	8.86e-51	157.0
	Sain3g04280	.	18	157	CCAAT-HAP3 Transcription Factor family	AT2G47810	65.0	2.06e-61	186.0
	Sain8g01252	ACH	19	158	CCAAT-HAP3 Transcription Factor family	AT3G53340	75.177	1.41e-73	216.0
	Sain9g00069	.	1	123	CCAAT-HAP3 Transcription Factor family	AT4G14540	88.618	6.31e-77	226.0
	Sain9g02364	.	1	201	CCAAT-HAP3 Transcription Factor family	AT5G47670	59.113	1.84e-73	221.0
	Sain10g00838	.	51	157	CCAAT-HAP3 Transcription Factor family	AT2G47810	69.369	2.08e-53	164.0
	Sain10g01992	ACH	1	91	CCAAT-HAP3 Transcription Factor family	AT2G37060	76.923	7.50e-44	138.0
	Sain11g00836	ACH	8	156	CCAAT-HAP3 Transcription Factor family	AT2G37060	78.0	2.21e-81	236.0
	Sain11g01221	ACH	1	173	CCAAT-HAP3 Transcription Factor family	AT2G37060	77.528	3.01e-86	249.0
	Sain11g02769	.	16	108	CCAAT-HAP3 Transcription Factor family	AT4G14540	81.72	4.55e-53	164.0
	Sain12g00541	ACH	1	126	CCAAT-HAP3 Transcription Factor family	AT4G14540	88.095	6.21e-78	229.0
	Sain13g01545	.	1	98	CCAAT-HAP3 Transcription Factor family	AT1G09030	70.707	1.17e-50	156.0
	Sain14g01135	.	19	215	CCAAT-HAP3 Transcription Factor family	AT2G13570	60.0	5.07e-67	202.0
	Sain10001128.1g00002	.	22	215	CCAAT-HAP3 Transcription Factor family	AT2G13570	58.768	1.58e-64	197.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Sain	CBFD_NFYB_HMF	2.1e-27	CL0012		TF	NF-YB