AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00545 | ATGTCATCTAAATCAACCAGCAAAACCCATTGTTCAAGAAGCAGTTCTTCACGATTGAAACGAGATGCTCGTGTGGTTTCACAAACCCCAATTGATGCTAAACTTCATGTCGATTTCGAAGAATCCGAAAGACTCTTTGATTACTCAACTTCCATTGATGTCAATGCTTCAACTTCAACTAGCAATGTTCCTTCTTCAACTGTTTCAGCTTATCTTCAAAAGATGCAAAGAGGAAGTCAAATCCAACCTTTTGGTTGCGTGATCGCCATTGATGATCAAACCTTAAACGTATTAGCTTACAGCGAAAACACCCTCGAGATGCTTGATTTATCCCCACATGCAGTTCCAAGCATTGAGCAACAAGAAGCTTTAACTTTTGGAACTGATATCCGTACACTTTTTCGATCTTCAAGTGCATCTGCTCTTCAAAAAGCAGCGAATTTCGCAGAAGTTAATCTTCTAAATCCGATATTAGTTCATTGCAAGAGTTCGGGTAAGCCATTTTACGCGATTTTACATAGAAATGATGTGGGTTTAGTTATAGATTTGGAGCCTGTGAATCCTGCTGATGTCCCTGTAACAGCAGCTGGAGCTTTGAAATCTTATAAGCTTGCAGCTAAAGCAATTTCAAGATTACAATCTTTACAAAGTGGGAATATATCTCGAATGTGTGATGTGGTGGTTCGAGAAGTGAGTGAGTTAACCGGGTATGACCGAGTCATGGTGTACAAGTTTCACGAAGATGAACACGGTGAAGTTATAGCCGAGTGTCGAAAGCCTGATCTTGAGCCGTATCTCGGCTTTCATTATCCTGCTACTGATATCCCTCAAGCTTCAAGATTTCTTTTTATGAAGAATAAAGTTAGAATGATTTGTGATTGTATGGCTGCACCTGTGAAAGTGATCCAATCCAAGAACTTGGCTCAGCCGTTGAGTCTTTCTGGCTCAGCTTTACGAGCCCCTCACGGTTGTCACGCACAATACATGGCTAACATGGGCTCGATTGCGTCTCTTGTGATGTCTGTAACCATCAACGATGGCGACAATGATGATGATGATGATGATGATGATGATGATAAAGAGTCTGAAAGTGGGATCAATCAGCAACAAAAACAAAAGGGTAAACGATTATGGGGTTTAGTCGTTTGCCATCATTCAACTTCAAGATTCATACCTTTTCCTTTAAGGTATGCGTGCGAGTTTTTGATTCAAGTTTTCAGCGTTCAAATCAACAAAGAAGTTGAGTTAACTGCTCAACTACGCGAAAAACACATCTTGAAAACCCAAACTGTTCTTTGCGATATGCTTCTGAGAGATGCGCCAATTGGGATTTTCACGCAATCGCCTAACGTAATGGATCTTGTTACGTGTGATGGAGCTGCGTTATACTACAAAAACAAGTTTTGGTTGCTTGGAATCACCCCAACCGAAACCCAAATCCAAGATATTGCAAATTGGCTTCTAGAAGAACATTTAGAGAGTACTGGATTAAGTACAGATAGTCTCATGGATGCTGGATATTCAAACGCTTCTGTTCTTGGAAAAGCTGTTTGCGGAATGGCTGCTGTCAAGATTACCTCAAAAGATTATCTTTTTTGGTTTCGATCCCATACAGCAAAGGAAGTGAAATGGGGTGGGGCCAAACATGATCCGGAAGATAAAGATGATGGGAGAAAGATGCATCCGAGGTCATCTTTTAAGGCGTTTTTGGAGGTGGTTAAGAATCGGAGTTTGCCATGGGAAGATGTGGAAATGGATGCTATTCATTCGTTACAGTTGATTTTGAGAGGATCTTTGCAAGATGATGATGAAGAAGAGATGGGTGATGATGATAAGAAGATTGTGAGTGTTCCAGCTGTGGATATGAGTATACAAAGGGTTGATAAGCTGCGTGTTGTGGCTAATGAAATGGTTCGGCTTATTGAGACAGCTTCGGTCCCTATATTTGCGGTTGATGGCAGTGGGAATATTAGTGGTTGGAATGATAAAATTGCTGAGCTTACTGGATTTCCTTTGGAGCAAGCTGTTGGTGTCCCGTTGGTTGAAATGGTTACTGATGATTCGATTGATGAAGTCAAAGCTATGGTCTCCTCTGCTTTAGAAGGCATCGAGGAGAAAAACGTTGAAATCAACCTCAAATGTGTCGATCGTCAAGAAACAAACGATCACATTACCCTTGTTACAAATGCTTGTTGTAGCCGTGATCTGAATGAAACCATCGTAGGGGTATGCTTCGTCGGACAAGATCTAACGGCTAAAAAGTTAATCACGGACAAATACACAAAAGTCAAAGGCGATTACACTAGTATCGTGCGTAGCCCATGTGCGCTTATTCCGCCTATTTTTATGATGGACGAATACGGCAAATGCTTGGAATGGAACGACGCCATGCAAAAATTAACCGGTCTGCGAAGGGAAGAAGCCAAGAATCGAATGCTTTTTGGTGAAGTTTTCACCGTCGGTAATTACGGTTGTCGGGTCAAAGGCGAAGATACTTTGACCAGGCTTAGAATACTACTAAATGAAGTGATTTCAGGTTTGGATGCAGATAAGATGATGTTCGGTTTCTTTGACCAAAACGGCAAGTATGTCGAAGCGTTACTTTCCGCTAACAAAAGGGTGGATGGAGATGGAAATATTACGGGGGTTTTGTGTTTTTTACATTTAACGAGCCCCGAGCTTCAACACGCGATGATGGTGCAAAGAATGTCTGAGCAGGCTGCGTTTAATAGCCTCACGAAGGTGTCTTATTTGCGGCATGAGCTTAAGAGTAGTTTAAATGGGATCAAATGTATTGAGGATTTGATGGAATCATCGGAATTGGGCCAAGAGCAGAGACATATTCTGCGTAAGAGCCATTTGTGTCGAGAACAATTAGTTCAGATCGTCAACGATGCTGATATCGAAAGCATCGAGGAATGTTATATGGAAATGAAATGTGCCGAGTTCAAACTCGGTGAGTCATTGGAGGTGGTTTTGAATCAAGTGACGAGTCTGAGCCGTGAGCGGAAGGTGGAAGTCGTGTATGATGCACCCGATCAAGTGTTATCGTTGTATGTATTTGGTGATAATTTGAGGCTTCAACAAGTCCTCTCGGATTTCTTGTCGAGTGCTCTCAACTTCACTCCCACTTTCGAAGGGTCTACGGTTCTGTTTCGCGTAACTCACAGGATGGAACACATCGGAGCCAAGATACAAGTCGCCCATCTTGAATTCAGGATTACCCATCCGGCACCAGGGATCCCGGAGAAGTTGATTCAGAATATGTTTCACCACAACCGAAGTGCCTCGAGAGAAGGGCTTGGGCTTTACATCAGCCAAAAGCTCGTTAAGGTCATGAACGGGACTGTTCAGTATCTTAGGGAGGCGGAGAGAGCATCTTTCATCGTTTTGATTGAGCTTCCATTGGCACCATCGTTGACTTCTGACAGCAAACGATCGAAAAGAATCTGA | 3453 | 42.4 | MSSKSTSKTHCSRSSSSRLKRDARVVSQTPIDAKLHVDFEESERLFDYSTSIDVNASTSTSNVPSSTVSAYLQKMQRGSQIQPFGCVIAIDDQTLNVLAYSENTLEMLDLSPHAVPSIEQQEALTFGTDIRTLFRSSSASALQKAANFAEVNLLNPILVHCKSSGKPFYAILHRNDVGLVIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLQSGNISRMCDVVVREVSELTGYDRVMVYKFHEDEHGEVIAECRKPDLEPYLGFHYPATDIPQASRFLFMKNKVRMICDCMAAPVKVIQSKNLAQPLSLSGSALRAPHGCHAQYMANMGSIASLVMSVTINDGDNDDDDDDDDDDKESESGINQQQKQKGKRLWGLVVCHHSTSRFIPFPLRYACEFLIQVFSVQINKEVELTAQLREKHILKTQTVLCDMLLRDAPIGIFTQSPNVMDLVTCDGAALYYKNKFWLLGITPTETQIQDIANWLLEEHLESTGLSTDSLMDAGYSNASVLGKAVCGMAAVKITSKDYLFWFRSHTAKEVKWGGAKHDPEDKDDGRKMHPRSSFKAFLEVVKNRSLPWEDVEMDAIHSLQLILRGSLQDDDEEEMGDDDKKIVSVPAVDMSIQRVDKLRVVANEMVRLIETASVPIFAVDGSGNISGWNDKIAELTGFPLEQAVGVPLVEMVTDDSIDEVKAMVSSALEGIEEKNVEINLKCVDRQETNDHITLVTNACCSRDLNETIVGVCFVGQDLTAKKLITDKYTKVKGDYTSIVRSPCALIPPIFMMDEYGKCLEWNDAMQKLTGLRREEAKNRMLFGEVFTVGNYGCRVKGEDTLTRLRILLNEVISGLDADKMMFGFFDQNGKYVEALLSANKRVDGDGNITGVLCFLHLTSPELQHAMMVQRMSEQAAFNSLTKVSYLRHELKSSLNGIKCIEDLMESSELGQEQRHILRKSHLCREQLVQIVNDADIESIEECYMEMKCAEFKLGESLEVVLNQVTSLSRERKVEVVYDAPDQVLSLYVFGDNLRLQQVLSDFLSSALNFTPTFEGSTVLFRVTHRMEHIGAKIQVAHLEFRITHPAPGIPEKLIQNMFHHNRSASREGLGLYISQKLVKVMNGTVQYLREAERASFIVLIELPLAPSLTSDSKRSKRI | 1150 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00545 | 1150 | PRINTS | Phytochrome signature | 748 | 768 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sain12g00545 | 1150 | PRINTS | Phytochrome signature | 529 | 548 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sain12g00545 | 1150 | PRINTS | Phytochrome signature | 636 | 652 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sain12g00545 | 1150 | PRINTS | Phytochrome signature | 234 | 253 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sain12g00545 | 1150 | PRINTS | Phytochrome signature | 134 | 156 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sain12g00545 | 1150 | PRINTS | Phytochrome signature | 319 | 340 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sain12g00545 | 1150 | PRINTS | Phytochrome signature | 655 | 670 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sain12g00545 | 1150 | PRINTS | Phytochrome signature | 728 | 745 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sain12g00545 | 1150 | PRINTS | Phytochrome signature | 562 | 580 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sain12g00545 | 1150 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 75 | 188 | IPR035965 | - | |
| Sain12g00545 | 1150 | Gene3D | PAS domain | 633 | 754 | - | - | |
| Sain12g00545 | 1150 | Gene3D | PAS domain | 779 | 890 | - | - | |
| Sain12g00545 | 1150 | ProSiteProfiles | Histidine kinase domain profile. | 917 | 1138 | IPR005467 | - | |
| Sain12g00545 | 1150 | PIRSF | Phytochrome-conventional | 2 | 1145 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Sain12g00545 | 1150 | MobiDBLite | consensus disorder prediction | 346 | 371 | - | - | |
| Sain12g00545 | 1150 | Gene3D | - | 419 | 592 | IPR043150 | - | |
| Sain12g00545 | 1150 | PANTHER | OS08G0260000 PROTEIN | 1 | 1012 | - | - | |
| Sain12g00545 | 1150 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Sain12g00545 | 1150 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 780 | 885 | IPR035965 | - | |
| Sain12g00545 | 1150 | Gene3D | - | 891 | 972 | - | - | |
| Sain12g00545 | 1150 | CDD | HisKA | 915 | 965 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Sain12g00545 | 1150 | ProSiteProfiles | PAS repeat profile. | 633 | 703 | IPR000014 | - | |
| Sain12g00545 | 1150 | Pfam | Phytochrome region | 427 | 601 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sain12g00545 | 1150 | SMART | gaf-1 | 219 | 424 | IPR003018 | GO:0005515(InterPro) | |
| Sain12g00545 | 1150 | Gene3D | - | 200 | 575 | IPR029016 | - | |
| Sain12g00545 | 1150 | SUPERFAMILY | ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase | 984 | 1135 | IPR036890 | - | |
| Sain12g00545 | 1150 | NCBIfam | PAS domain S-box protein | 640 | 755 | IPR000014 | - | |
| Sain12g00545 | 1150 | NCBIfam | PAS domain S-box protein | 780 | 886 | IPR000014 | - | |
| Sain12g00545 | 1150 | CDD | PAS | 777 | 888 | IPR000014 | - | |
| Sain12g00545 | 1150 | CDD | PAS | 644 | 750 | IPR000014 | - | |
| Sain12g00545 | 1150 | FunFam | Phytochrome | 419 | 551 | - | - | |
| Sain12g00545 | 1150 | CDD | HATPase-Phy-like | 1021 | 1134 | IPR044767 | - | |
| Sain12g00545 | 1150 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 219 | 404 | IPR016132 | - | |
| Sain12g00545 | 1150 | SUPERFAMILY | GAF domain-like | 199 | 411 | - | - | |
| Sain12g00545 | 1150 | ProSiteProfiles | PAS repeat profile. | 763 | 818 | IPR000014 | - | |
| Sain12g00545 | 1150 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 625 | 746 | IPR035965 | - | |
| Sain12g00545 | 1150 | FunFam | Phytochrome | 975 | 1136 | - | - | |
| Sain12g00545 | 1150 | Gene3D | PAS domain | 76 | 322 | - | - | |
| Sain12g00545 | 1150 | Pfam | GAF domain | 221 | 413 | IPR003018 | GO:0005515(InterPro) | |
| Sain12g00545 | 1150 | Pfam | PAS fold | 70 | 186 | IPR013654 | GO:0006355(InterPro) | |
| Sain12g00545 | 1150 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1022 | 1136 | IPR003594 | - | |
| Sain12g00545 | 1150 | Gene3D | - | 975 | 1138 | IPR036890 | - | |
| Sain12g00545 | 1150 | SUPERFAMILY | GAF domain-like | 422 | 600 | - | - | |
| Sain12g00545 | 1150 | Pfam | PAS fold | 769 | 888 | IPR013767 | GO:0006355(InterPro) | |
| Sain12g00545 | 1150 | Pfam | PAS fold | 636 | 749 | IPR013767 | GO:0006355(InterPro) | |
| Sain12g00545 | 1150 | SMART | HKATPase-4 | 1022 | 1138 | IPR003594 | - | |
| Sain12g00545 | 1150 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 319 | 328 | IPR013516 | - | |
| Sain12g00545 | 1150 | MobiDBLite | consensus disorder prediction | 346 | 362 | - | - | |
| Sain12g00545 | 1150 | SMART | pas-2 | 765 | 835 | IPR000014 | - | |
| Sain12g00545 | 1150 | SMART | pas-2 | 635 | 701 | IPR000014 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00545 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:12266212 | Sain14g00041 | Sain-Chr14:925583 | dispersed | |
| Sain | Sain-Chr12:12266212 | Sain12g01601 | Sain-Chr12:59923027 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Sain1g01003 | . | 5 | 1096 | Histidine Kinase gene family | AT4G18130 | 57.453 | 0.0 | 1309.0 | |
| Sain2g01375 | ACH | 4 | 921 | Histidine Kinase gene family | AT5G10720 | 59.385 | 0.0 | 1068.0 | |
| Sain2g01376 | . | 5 | 475 | Histidine Kinase gene family | AT5G10720 | 59.494 | 0.0 | 534.0 | |
| Sain3g04207 | . | 8 | 1121 | Histidine Kinase gene family | AT2G47430 | 36.704 | 0.0 | 608.0 | |
| Sain4g00432 | ACH | 73 | 1056 | Histidine Kinase gene family | AT2G01830 | 68.072 | 0.0 | 1332.0 | |
| Sain8g03017 | ACH | 27 | 1197 | Histidine Kinase gene family | AT2G17820 | 61.205 | 0.0 | 1410.0 | |
| Sain9g03744 | ACH | 106 | 1052 | Histidine Kinase gene family | AT2G01830 | 66.942 | 0.0 | 1295.0 | |
| Sain10g01585 | . | 49 | 1155 | Histidine Kinase gene family | AT2G18790 | 75.542 | 0.0 | 1767.0 | |
| Sain10g03514 | ACH | 10 | 921 | Histidine Kinase gene family | AT5G10720 | 58.668 | 0.0 | 1064.0 | |
| Sain11g02368 | ACH | 28 | 1197 | Histidine Kinase gene family | AT2G17820 | 64.209 | 0.0 | 1524.0 | |
| Sain11g03092 | . | 373 | 453 | Histidine Kinase gene family | AT2G47430 | 46.914 | 6.69e-16 | 69.3 | |
| Sain12g00545 | . | 3 | 1110 | Histidine Kinase gene family | AT5G35840 | 59.947 | 0.0 | 1454.0 | |
| Sain12g01601 | . | 1 | 1120 | Histidine Kinase gene family | AT1G09570 | 73.571 | 0.0 | 1790.0 | |
| Sain14g00041 | . | 39 | 1152 | Histidine Kinase gene family | AT2G18790 | 76.592 | 0.0 | 1808.0 |