AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00551 ATGGCTACACAAATCAATCCCTGTTCTTCATCTTCCACCACCTTCCCACCTTCTTCACTCAATCAAGAAACCTTTTCTTCTGCAAAATTCTTCAATTTCTCAACAAAATCCAGGTGGGTTTCCAAGATTCACGCTAGAATCAATCCGAAAAATCAGTTCGAACTCAAATCCTCAAATGGGTATCCTCTTAATGCGATTTCGTTGCAAGATGGTGCAGCCGAGAAGCCTCTGGCAAAAGAGCTTGTCTTATCCGAAAAAGCCGAATCCAATCTTAGCGTAACCGTTGTTGGTGCTTCAGGCGATCTTGCCAAGAAAAAGATATTTCCGGCACTTTTTGCTCTCTTTTACGAAGATTGTTTACCTCAGAATTTTACTATATTTGGTTATGCCCGAACCAAAATGACCGACGAGGAGCTGAGGGAGATGATTAGTGGAACGTTGACTTGCAGAATCGATAAGAGAGAGAACTGTGGTGACAAAATGGAAAAGTTTCTTGAAAGATGCTTTTACCATTCGGGTCAATACAACTCCGAGGAACATTTTGCAGAATTGGACATTAAGCTGAAACAGAAAGAGGGTGGAAAAGTATCGAATAGATTGTTTTACTTGTCGATACCTCCAGACATATTTGTGGATGTGGTACGATGTGCCAGTGGCAAAGCTTCTGCCAAGAACGGGTGGACAAGGGTAATTGTGGAAAAACCATTTGGTCGAGATGCGGAATCATCTGGAGAGCTAACAAGAAGCCTGAAGCAGTACTTAGCTGAGGATCAAATCTTCCGGATTGATCATTACTTGGGGAAGGAGCTCGTGGAGAATTTATCGGTTCTTCGTTTCTCAAATCTTGTTTTTGAACCACTTTGGTCAAGAAACTACATTCGTAGTGTACAGTTCATATTTTCTGAAGATTTTGGTACAGAAGGGCGAGGAGGATACTTTGACAACTATGGAATCATCCGTGATATAATGCAAAACCACCTCCTGCAAATATTAGCGTTGTTCGCAATGGAAACACCCGTGACTTTGGATGCCGAGGACATCAGAAATGAAAAGGTTAAAGTTTTGAGATCGATGAGACAGCTGCGGCTTGAAGACGTAGTGATTGGCCAATACAAGGGACATAGCAAGGACGGAAAGAGGTATTTAGGATACACAGAGGATCCGACTGTGCCAAACGATAGTCTCACTCCAACTTTTGCAGCAGCCGCGCTCTTTATTGATAATGCTCGGTGGGATGGCGTTCCGTTTCTTATGAAAGCCGGCAAGGCCCTCAATACTAGACGGGCAGAGATCAGAGTTCAATTCAGACATGTTCCAGGTAATCTATACAAGCGAAACTTCGGGACGGATTTGGATAAGGCTACGAACGAGCTTGTGCTTCGTGTGCAGCCTGACGAAGCCATTTATCTCAAGATAAATAACAAGATTCCTGGTCTCGGAATGAGGCTCGATCGCAGCGACCTTAATTTGCTCTACAGGACGAGGTATTCAAAAGAAATCCCGGATGCATATGAGCGGCTTCTGTTGGATGCGATAGCAGGAGAAAGAAGATTGTTCATAAGAAGTGATGAGCTTGATGCTGCTTGGTCTATATTCACGCCATTGTTGAAAGAACTCGAAGCCAAGAAGATTTCACCGGAGTTGTATCCGTATGGCAGCAGAGGACCCGTTGGAGCTCATTATCTGGCCGCAAACTATAATGTCCGGTGGGGAGATCTCACCGGTGACGACTGA 1734 44.06 MATQINPCSSSSTTFPPSSLNQETFSSAKFFNFSTKSRWVSKIHARINPKNQFELKSSNGYPLNAISLQDGAAEKPLAKELVLSEKAESNLSVTVVGASGDLAKKKIFPALFALFYEDCLPQNFTIFGYARTKMTDEELREMISGTLTCRIDKRENCGDKMEKFLERCFYHSGQYNSEEHFAELDIKLKQKEGGKVSNRLFYLSIPPDIFVDVVRCASGKASAKNGWTRVIVEKPFGRDAESSGELTRSLKQYLAEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRSVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVTLDAEDIRNEKVKVLRSMRQLRLEDVVIGQYKGHSKDGKRYLGYTEDPTVPNDSLTPTFAAAALFIDNARWDGVPFLMKAGKALNTRRAEIRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIYLKINNKIPGLGMRLDRSDLNLLYRTRYSKEIPDAYERLLLDAIAGERRLFIRSDELDAAWSIFTPLLKELEAKKISPELYPYGSRGPVGAHYLAANYNVRWGDLTGDD 577
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00551 577 PRINTS Glucose-6-phosphate dehydrogenase signature 323 339 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 PRINTS Glucose-6-phosphate dehydrogenase signature 410 436 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 PRINTS Glucose-6-phosphate dehydrogenase signature 229 242 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 PRINTS Glucose-6-phosphate dehydrogenase signature 253 281 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 PRINTS Glucose-6-phosphate dehydrogenase signature 305 322 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 263 269 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Sain12g00551 577 Coils Coil 344 364 - -
Sain12g00551 577 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 276 570 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 86 569 IPR001282 GO:0004345(PANTHER)|GO:0006006(PANTHER)|GO:0006006(InterPro)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 FunFam Glucose-6-phosphate 1-dehydrogenase 87 261 - -
Sain12g00551 577 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 263 570 - -
Sain12g00551 577 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 90 572 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 FunFam Glucose-6-phosphate 1-dehydrogenase 262 571 - -
Sain12g00551 577 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 88 276 IPR036291 -
Sain12g00551 577 Gene3D Dihydrodipicolinate Reductase; domain 2 262 571 - -
Sain12g00551 577 NCBIfam glucose-6-phosphate dehydrogenase 91 570 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 95 273 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 PIRSF G6PD 79 574 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Sain12g00551 577 Gene3D - 86 261 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00551 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:12360471 Sain9g03823 Sain-Chr9:207513004 dispersed
Sain Sain-Chr12:12360471 Sain8g02092 Sain-Chr8:138276507 transposed