AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00555 | ATGGTGGGGCTATCTGTCGGAGAAAAGCATTTTATACAGGGTGGGATTGCTCAAGATCTTCGTACCGATGGTCGTAAAAGATTAACTTACCGACCCATTTTTGTGGAAACCGGAGTCATTGCTCAGGCGAATGGTTCAGCAAGAGTGAAGATGGGTAGAACTGAAGTCATAGTTAGTGTGAAGGCTGAGCTAGGAAGACCAAGTTCTTCAGCACCTGACAAAGGAAAAGTTTCCATTTATATTGATTGCAGTCCCACAGCTGCACCACAATTCGAGGGGAGAGGTGGTGAAGAATTGTCGATGGAACTTTCTGCAGCCCTGCGGCAATGTCTTTTGGGAGGTAAAAGTGGAGCAGGAGCTGGAATTAATCTTTCGTCTCTTTCAATTGTGGATGGGAAGGTCTGTTGGGATTTATATATCGATGGTCTTGTAATTAGTATGGATGGAAACATACTCGATGCCTTAGGTGCTGCAATCAAGGCTGCTTTAAGCAACACAGGTATTCCAAAAGTGAATGTTGCTTCAGCCGCCGCTTCCGATGAACAGCCAGAGGTCGACGTGAGTGATGAAGAGTTTCTACAATTCGACACCACTGCGGTCCCCGTCATAATTACATTAACCAAGATTGGAAGACATTATATTGTTGATGCAACTTCAGAGGAGGAATCACAAATGAGCTCTGCTGTCTCTGTTTCCATCAACAGGCAAGGTTTGATCTGTGGGCTGACCAAAAGAGGGGGTGCGGGTTTAGATCCTAGTGTCATTCTTGACATGATATCGGTGGCTAAACATGTTAGTGAGCAGTTAATGAACAAATTAGATTCCGAGATAGCTGCAGCCGAGGCCATGGAAGAAGAGTCATGA | 864 | 45.14 | MVGLSVGEKHFIQGGIAQDLRTDGRKRLTYRPIFVETGVIAQANGSARVKMGRTEVIVSVKAELGRPSSSAPDKGKVSIYIDCSPTAAPQFEGRGGEELSMELSAALRQCLLGGKSGAGAGINLSSLSIVDGKVCWDLYIDGLVISMDGNILDALGAAIKAALSNTGIPKVNVASAAASDEQPEVDVSDEEFLQFDTTAVPVIITLTKIGRHYIVDATSEEESQMSSAVSVSINRQGLICGLTKRGGAGLDPSVILDMISVAKHVSEQLMNKLDSEIAAAEAMEEES | 287 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00555 | 287 | Pfam | 3' exoribonuclease family, domain 2 | 200 | 263 | IPR015847 | - | |
| Sain12g00555 | 287 | Pfam | 3' exoribonuclease family, domain 1 | 30 | 169 | IPR001247 | - | |
| Sain12g00555 | 287 | CDD | RNase-PH-RRP42 | 4 | 275 | - | - | |
| Sain12g00555 | 287 | Coils | Coil | 266 | 286 | - | - | |
| Sain12g00555 | 287 | FunFam | Exosome complex component RRP42 | 3 | 286 | - | - | |
| Sain12g00555 | 287 | PANTHER | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN | 1 | 281 | IPR050590 | GO:0000176(PANTHER)|GO:0000177(PANTHER)|GO:0000467(PANTHER)|GO:0016075(PANTHER)|GO:0017091(PANTHER)|GO:0034427(PANTHER)|GO:0034473(PANTHER)|GO:0034475(PANTHER)|GO:0034476(PANTHER)|GO:0043928(PANTHER)|GO:0071028(PANTHER)|GO:0071035(PANTHER)|GO:0071038(PANTHER)|GO:0071042(PANTHER) | |
| Sain12g00555 | 287 | SUPERFAMILY | Ribonuclease PH domain 2-like | 196 | 283 | IPR036345 | - | |
| Sain12g00555 | 287 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 4 | 223 | IPR020568 | - | |
| Sain12g00555 | 287 | Gene3D | - | 3 | 287 | IPR027408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00555 | K12589 | exosome complex component RRP42 |