AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00556 ATGGAATCGAACGTAGAAGAAGCTCTTCGAGCGAAAGAGAGCGCAGAAAAGCTGTTTTCAATAAAAGATTTCACAGGTGCAAAGCAGTATGCTTTGAAAGCTCAAGCGTTTTGCCCGCAGCTAGAAGGCATCTCTCAAATGGTGGCTACGTTTGAAATCTATGCCGCCACTGAGACAAAGATAAACGGTGAAATTGATTTGTATTCGGTTCTTGGATTAGGCCCATCAGCAGATAAATCCGTAATGAAGAAACAGTACAAAAAGATGGCTGTTCTTCTTCACCCTGATAAGAACAAAACGAAAGGCGCTGATGAGGCTTTTAAGCTCGTTTCTGAAGCGTGGAGTGTGTTATCAGATAGCACAAAACGAAACTCTTATGATATCAGAAGAAATAAGCATCTTTCAGCCACTAATTCCCAATCGGGCTTTTATGGAACAACTGGTGTTCCAGGTTTCGACAGTTCTTCCAAGAATCCAGCATCTGTCAGTAGACTCGACACTTTCTGGACTGTCTGCACATCTTGTCGTGTTCAGTATGAATATCTTCGGAAATATGTGAATAAGAGACTTTCGTGTAAGAATTGTCGTGGGGTTTTTGTAGCGGTTGAAACAGGAGCAGCTCCTGTGACTTATTGTCCGTGGTCGTATACGGCTGAAAACGGATACAATAACCATTCATATGCTCCTGCTACTTATATACCAAACTCGTCTGTATGTTTTTCAGCCAATAGTTCTTCCACTTTTCATTCAGCACATGGACCCGAGTACGCGAGTAATGTATCCTTCCAGTGGAATACTTCTACAGGCGTTTCCGATCCTAATCTTGTTCATAAATCCAATGGAAACACAAGTAGAACAAAAGCATGCGCAAAACACCTAAGAAATTCTTCTGCTAACATGGGCACCAGTGAAACCCCTGTTGTTCGACTTGGTAGGCCTCCGAAGAAGAGAAAGATTGAATTGATGGAAGGATCTCAAAATCCAAACGGGGAAATGTTATTCAGATCAGACCCTGAAATGGTGGTAAATAACGGAAATGTTATCAGTGAAACGACTACAAAATGGTATCCTGCCGCCCCTGCTTTTGATGCAAGAAAGTTGTTGATTGACAAAGCTAGATCAGTGATTCGATTCAAGTTGGAAGAAATGAAGTTAGCTTCAAAGAACGGAAAAACGTTAAAGAAAAGTAATTCTATGCCAATAACTGTTCCCGACCCAGATTTCCACGATTTCGACATGGATAGATCAGAGGAAGTATTCAAACCAAAGCAAATATGGGCGATATATGATGAAGAAGATGGGATGCCTCGTCTTTACTGTCTTGTTCGCCAAGTCATCTCCGTGAAACCGTTTCAGCTCTACATTAGTTACTTAAACTCAAAAACCGACACTGAATTTGGCGCTGTAAAATGGATAGAATCTGGTTTCACAAAATCCTGTGGAAGTTTCCGGGTTTTTCATTCTGATATTGTTGACTCAGTCAACATTTTTTCTCATCTTTTGGGACGAGAAAAGGCGGGTAGAGGAGGTTGCGTTAAAATATACCCAAAAAGAGGCGACGTTTGGGCTGTGTATCGCAATTGGTCAGTTAACTGGAATCGAAAGACGCCAAAAGAAGTTAGGCACCAGTACGAGATGGTGGAGGTTCTTGACGATTATTCTGAAGAGCGTGGAGTGTGTGTAACTTCGCTGATGAAGTTACAAGGATACAAAACGGTTTATCAAAGGGATTTGAACAAAAACGCAACTCGGTGGATTCCAAGAAGGGAAATGCTACGGTTTTCGCACCAAGTTCCGTCGTGTGTTTTGCGGGGTCAGGCGCTAAATTTACCAGATGGGTGTTGGGATCTTGATCCTGCTGCAACGCCAGAAGAGCTTCTTCGGGCGGCAATGGAGGCGGCAGAGGAGGAGGTTGGTGGTGGTGCGGCGGTGGAGGAGTTGCGAGATTGA 1950 43.08 MESNVEEALRAKESAEKLFSIKDFTGAKQYALKAQAFCPQLEGISQMVATFEIYAATETKINGEIDLYSVLGLGPSADKSVMKKQYKKMAVLLHPDKNKTKGADEAFKLVSEAWSVLSDSTKRNSYDIRRNKHLSATNSQSGFYGTTGVPGFDSSSKNPASVSRLDTFWTVCTSCRVQYEYLRKYVNKRLSCKNCRGVFVAVETGAAPVTYCPWSYTAENGYNNHSYAPATYIPNSSVCFSANSSSTFHSAHGPEYASNVSFQWNTSTGVSDPNLVHKSNGNTSRTKACAKHLRNSSANMGTSETPVVRLGRPPKKRKIELMEGSQNPNGEMLFRSDPEMVVNNGNVISETTTKWYPAAPAFDARKLLIDKARSVIRFKLEEMKLASKNGKTLKKSNSMPITVPDPDFHDFDMDRSEEVFKPKQIWAIYDEEDGMPRLYCLVRQVISVKPFQLYISYLNSKTDTEFGAVKWIESGFTKSCGSFRVFHSDIVDSVNIFSHLLGREKAGRGGCVKIYPKRGDVWAVYRNWSVNWNRKTPKEVRHQYEMVEVLDDYSEERGVCVTSLMKLQGYKTVYQRDLNKNATRWIPRREMLRFSHQVPSCVLRGQALNLPDGCWDLDPAATPEELLRAAMEAAEEEVGGGAAVEELRD 649
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00556 649 PRINTS DnaJ domain signature 86 101 IPR001623 -
Sain12g00556 649 PRINTS DnaJ domain signature 68 86 IPR001623 -
Sain12g00556 649 PRINTS DnaJ domain signature 102 122 IPR001623 -
Sain12g00556 649 Pfam DnaJ domain 66 127 IPR001623 -
Sain12g00556 649 SUPERFAMILY Chaperone J-domain 63 145 IPR036869 -
Sain12g00556 649 CDD DnaJ 66 119 IPR001623 -
Sain12g00556 649 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Sain12g00556 649 PANTHER BNAC03G44070D PROTEIN 1 622 - -
Sain12g00556 649 Pfam Domain of unknown function (DUF3444) 399 606 IPR024593 -
Sain12g00556 649 Gene3D DnaJ domain 64 169 IPR036869 -
Sain12g00556 649 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Sain12g00556 649 SMART dnaj-3 65 122 IPR001623 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00556 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
138767 Sain12g00556 Sain13g02248
138768 Sain12g00556 Sain3g00482
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:2443222 Sain12g00556 Sain-Chr12:12479719 dispersed
Sain Sain-Chr12:12479719 Sain4g02073 Sain-Chr4:70366490 dispersed
Sain Sain-Chr12:12479719 Sain13g02248 Sain-Chr13:129422954 wgd
Sain Sain-Chr12:12479719 Sain3g00482 Sain-Chr3:11838960 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain2g00861 . 7 126 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.833 9.60e-20 89.0
Sain3g00482 ACH 7 227 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.858 6.38e-29 115.0
Sain3g02322 ACH 66 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.211 1.99e-08 53.1
Sain4g00370 ACH 7 203 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.498 1.04e-32 126.0
Sain4g02073 ACH 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.488 1.91e-28 114.0
Sain5g00587 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.131 3.41e-22 96.7
Sain5g01702 . 7 311 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 44.571 6.09e-93 278.0
Sain6g01611 . 166 261 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 44.444 1.28e-24 94.4
Sain6g01612 . 6 122 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 61.538 3.63e-44 144.0
Sain6g01614 ACH 6 311 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.073 8.76e-81 244.0
Sain7g00402 . 7 199 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.171 1.51e-23 99.4
Sain8g00861 ACH 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.897 5.82e-34 123.0
Sain9g00290 . 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.878 1.01e-09 58.5
Sain9g00344 . 1 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.945 3.44e-29 116.0
Sain9g01700 ACH 8 311 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 48.148 4.38e-97 287.0
Sain9g03854 ACH 7 141 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 43.704 1.65e-27 111.0
Sain10g01821 ACH 58 138 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.922 7.09e-06 47.4
Sain10g03343 . 10 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.505 6.38e-29 115.0
Sain10g03413 . 35 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.538 1.52e-14 70.1
Sain11g00094 ACH 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.784 1.59e-30 120.0
Sain11g02566 . 14 226 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.71 3.26e-44 153.0
Sain12g00556 ACH 7 221 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.186 5.09e-31 121.0
Sain12g01021 . 17 165 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 51.923 4.38e-43 159.0
Sain12g01024 . 179 421 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 35.593 6.13e-43 159.0
Sain13g00246 ACH 64 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.356 1.00e-08 53.1
Sain13g00247 ACH 66 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.803 7.19e-08 51.6
Sain13g02248 ACH 5 206 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.212 9.67e-28 112.0