Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sain12g00563	ATGGACTTTTCAGAATCTACGAAAGTTGTATACGATAGGATCCAAAAGATCGAACCCGAAAACGTCTCCAAGATTATCGGGTATCTTCTTTTGCAAGATGATGGTGAAAGAGAGATGATAAGACTAGCCTTCGGCCCCGATAAGTTAATACACTCTTTGATCAATAACGCCAAAACCCATCTCAAATTACCGTTCAATACACCCTCTTGTCCGCCACTTTCCCCTCCTCAAATCCCCGAAATGCCCTTACACTTTACACCGTTCTCTCCTTCACCTCACCGTTCCCCATCAACTCTCCAAATCCCAACTCGCTGTTTTGATCCCCATGGTCAACCCGTTGACTACGTTCCCATGGTTTATCCTGCTTCGTTTCCTGAAGATTATCGTCTTCACAACCAACTTCGTTTCTTGTCTTTAGAAGACCGGATTGACCCGGTCAACAGCCCGGAATTTTCAACTAACAGTTACTACTCATCGGAGCCCGCATTAGGACCTAGAGCCAATAGGAGGTCGCCAAGTTTACCTGAATTCCCTTTCAAAGTTTGCCATTACTTCATTAAAGGATTTTGTAGGCATGGACATAACTGCAGGTACTTGCATCCTACCGCCGAAAGCTTCTCCCAGATCTTTACCCCTGAGGACGATCACGTCTTTTCACCTGGGTCTCTCGAGAAACTAGAGTTAGAACTCACCGAGCTCTTGAAATCAAGAAGAGGGTTCCCTGTCTCCATAGCTTCTTTACCAATGCTATATTATGAAAAGTTCGGTAAGACACTTCAGGCTGAGGGGTATCTCACGGAAAGCCAGAGACACGGGAAAGCGGGTTATAGCTTAACCAAACTTCTTGCACGGCTTAAGAGCATTTGTCTCATTGATAGGCCTCATGGGCAACACGCAGTCGTTTTGGCTGATGACGTGGCAAAATGCACGGATCATAACGGAGATAGAAATGAACATGGTGGTATTGTGGCTGGTTCTAGACAGATATATTTGACGTTTCCGGCTGAGAGTACCTTCTCAGAGCGCGATGTTTTCAACTATTTTAACAAATTCGGGCCTGTTCATGACGTGAGAATTCCATGTCAGCAAAAGAGAATGTTTGGGTTTGTGACTTTTGTCTTCGAGGATACAGTTAGGCATATTTTAAACAAGGGAAACCCTCATTTCGTGAGCGGTGCACGTGTTTTGATCAAACCTTATCGTGAAAAATCTAAGGCGGATGATAGGAAACACGGAGAGATGTTTCAGAATCCTATGTACCAAGGTGCTCACTTACTCGATAAGCAGCTGATTCATGAACAACAGGAGCAAGCACTTGAATTCGAGAGAAGGCGTTTCTCAGAAATGCAATTAACAGCAGATCCCAATAACCACCAATTCCCATGTTTTGGAACCTCACTCGAAGAGTTGAAGCTTCCAGAAGGCAATTCTCATGCACAACAGATGGATTTTCCTTCGGCAGAGCGTTTTAATTATCTTCTGGATGTTCTAAACAACAGGGAGGAAACAGTTAGGCAGATCAATACCAAATACAATGAGCAGGAGAGTAGTCAGGGACTGAATCTTCCAGACAGCCCGTTTGCATCTGCGTTAGGGGGCGAAATATCGACAGTTATATAG	1620	44.44	MDFSESTKVVYDRIQKIEPENVSKIIGYLLLQDDGEREMIRLAFGPDKLIHSLINNAKTHLKLPFNTPSCPPLSPPQIPEMPLHFTPFSPSPHRSPSTLQIPTRCFDPHGQPVDYVPMVYPASFPEDYRLHNQLRFLSLEDRIDPVNSPEFSTNSYYSSEPALGPRANRRSPSLPEFPFKVCHYFIKGFCRHGHNCRYLHPTAESFSQIFTPEDDHVFSPGSLEKLELELTELLKSRRGFPVSIASLPMLYYEKFGKTLQAEGYLTESQRHGKAGYSLTKLLARLKSICLIDRPHGQHAVVLADDVAKCTDHNGDRNEHGGIVAGSRQIYLTFPAESTFSERDVFNYFNKFGPVHDVRIPCQQKRMFGFVTFVFEDTVRHILNKGNPHFVSGARVLIKPYREKSKADDRKHGEMFQNPMYQGAHLLDKQLIHEQQEQALEFERRRFSEMQLTADPNNHQFPCFGTSLEELKLPEGNSHAQQMDFPSAERFNYLLDVLNNREETVRQINTKYNEQESSQGLNLPDSPFASALGGEISTVI	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sain12g00563	539	ProSiteProfiles	OST-type HTH domain profile.	222	305	IPR025605	-
	Sain12g00563	539	PANTHER	RNA-BINDING (RRM-RBD-RNP MOTIFS)	1	530	-	-
	Sain12g00563	539	SMART	c3hfinal6	178	202	IPR000571	GO:0046872(InterPro)
	Sain12g00563	539	ProSiteProfiles	Zinc finger C3H1-type profile.	176	203	IPR000571	GO:0046872(InterPro)
	Sain12g00563	539	SUPERFAMILY	CCCH zinc finger	179	201	IPR036855	GO:0046872(InterPro)
	Sain12g00563	539	SMART	rrm1-1	328	398	IPR000504	GO:0003723(InterPro)
	Sain12g00563	539	Gene3D	-	177	257	-	-
	Sain12g00563	539	Gene3D	-	333	408	IPR012677	-
	Sain12g00563	539	Pfam	RNA recognition motif	339	387	IPR000504	GO:0003723(InterPro)
	Sain12g00563	539	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	327	402	IPR000504	GO:0003723(InterPro)
	Sain12g00563	539	FunFam	zinc finger CCCH domain-containing protein 53-like isoform X2	334	405	-	-
	Sain12g00563	539	SUPERFAMILY	RNA-binding domain, RBD	339	414	IPR035979	GO:0003676(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sain12g00563	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	138773	Sain12g00563	Sain13g02239

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Sain	Sain-Chr12:12589281	Sain9g00213	Sain-Chr9:5011125	dispersed
	Sain	Sain-Chr11:139911136	Sain12g00563	Sain-Chr12:12589281	transposed
	Sain	Sain-Chr12:12589281	Sain13g02239	Sain-Chr13:129272600	wgd