AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00564 ATGCAAGCATCGGAGCGCAACAGATCCGACACATCTGACGCTTTTTACTATCAATCGATGCAACAAATCGAGGCTTTCTGTAAGCCTCAAGTTCAATGTTTAGATCATATCGGCCATCGGACCAATTATTTCGCCAAATCGGAGCCATACTGCACACTCGAATCTTCTTCCGCAAATGGCAGTTGTACCACGATGTACTACTCGCCTTCCACTTTATCTTCCTCGCAGAATGAATCTCATTCCTCTGATGCCAACGACTTTAGGTATAGATTGAGGCAGTTGGAGACTGTAATGCTTGGAGATTCGGATTTCGACGACGATGCCGGAAATGGTAAATCATTCGCCGGAGGTGTAGTCGACTTGCCGGATGTCAACATTTGGAAAGAGATGATGGGGTGTTTTCCGAGACGAGACTTGAAACAAATCCTCATTGCCTGTGCTAAATCGGTTTCAAATCACGATTTATTTAACGCCCAACTGTTAATATCGGAGCTCCGGCAAATGGTGTCCGTCGCCGGAGAACCGATTCAGCGTCTGGGTGCATACATGTTAGAAGGACTTGTAGCTCGCCTTTCCTCTTCCGGCAGCACAATCTACAACTCCGATCTCCCCTCCAATATGCACATTTTGTACGAAATTTGCCCTTATTTCAAATTCGGTTACATGTCAGCAAACGGAGCAATAGCGGAAGCAATGAAAGACGAAAAACGCGTCCACATCATCGACTTCCGTATTTTACAAGGGAGTCAATGGATCCCGTTAATCCAAGCATTTGCCAAGAGACCAGGTGGTCCCCCACATATCCGGATAACGGGCTTCCATGACTCCACAACCAACTTGCACATTGTGGGAAAAAGGTTATGCAAGCTAGCAAAAGCCCACAATGTGCCTTTTGAGTTTCACACTCAGGTTGGGCCCGAAAGTTTTCGAGCCCAATCAAATGAGTCTTTGGCGGTTAATTTCGCATTTGTTTTACATCGAATGCCGGATGAGAGTGTGAGCACTCGAAACCATAGAGACCGAGTGTTGAGACTCGTTAAGAGCCTCAACCCGAAAGTCGTAACCCTAGTCGAGCAAGAATCTAACACAAACACGGCTCCGTTTTACCCTCGGTTTCTTGAGGCTCTCGAGTATTATCACGCAATGTTTGAGTCGATAGACATCACACTTCCACGCCAACACAAAGAAAGAATAAACGTGGAGCAACATTGTTTGGCTCGAGACGTTGTGAACATAGTAGCGTGCGAGGGGAACGAGAGGGTTGAACGACACGAGCTTTTGGGGAAGTGGAAGTTGCGGTTTAGTATGGCAGGGTTTAGCCCGAGCCCGATGAGTGCGGTGGTGAATGGAACGATCAAAAGGCTGCTAAAAAACTATAGTCAGAAATACAGGCTTGAAGAAAGAGATGGAGCTTTGTATCTTGGGTGGATGAATAGAGATTTGGTTGCTTCTTGTGCTTGGAAATGA 1467 46.42 MQASERNRSDTSDAFYYQSMQQIEAFCKPQVQCLDHIGHRTNYFAKSEPYCTLESSSANGSCTTMYYSPSTLSSSQNESHSSDANDFRYRLRQLETVMLGDSDFDDDAGNGKSFAGGVVDLPDVNIWKEMMGCFPRRDLKQILIACAKSVSNHDLFNAQLLISELRQMVSVAGEPIQRLGAYMLEGLVARLSSSGSTIYNSDLPSNMHILYEICPYFKFGYMSANGAIAEAMKDEKRVHIIDFRILQGSQWIPLIQAFAKRPGGPPHIRITGFHDSTTNLHIVGKRLCKLAKAHNVPFEFHTQVGPESFRAQSNESLAVNFAFVLHRMPDESVSTRNHRDRVLRLVKSLNPKVVTLVEQESNTNTAPFYPRFLEALEYYHAMFESIDITLPRQHKERINVEQHCLARDVVNIVACEGNERVERHELLGKWKLRFSMAGFSPSPMSAVVNGTIKRLLKNYSQKYRLEERDGALYLGWMNRDLVASCAWK 488
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00564 488 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 84 487 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sain12g00564 488 ProSiteProfiles GRAS family profile. 130 488 IPR005202 -
Sain12g00564 488 Pfam GRAS domain family 139 488 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00564 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:4312889 Sain12g00564 Sain-Chr12:12669699 dispersed
Sain Sain-Chr12:12669699 Sain9g00216 Sain-Chr9:5090315 dispersed
Sain Sain-Chr12:12669699 Sain3g00475 Sain-Chr3:11498972 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sain1g00451 ACH 187 555 GRAS Transcription Factor family AT4G00150 60.881 1.45e-151 449.0
Sain2g00179 ACH 87 555 GRAS Transcription Factor family AT4G00150 50.291 6.40e-156 459.0
Sain2g00802 . 141 530 GRAS Transcription Factor family AT4G37650 53.5 5.43e-141 411.0
Sain2g00804 . 146 530 GRAS Transcription Factor family AT4G37650 48.615 1.54e-125 372.0
Sain3g00300 . 1 510 GRAS Transcription Factor family AT3G13840 49.527 1.12e-159 463.0
Sain3g00475 . 11 490 GRAS Transcription Factor family AT5G48150 60.516 0.0 587.0
Sain3g00599 . 178 546 GRAS Transcription Factor family AT3G03450 31.008 2.00e-59 204.0
Sain3g02369 . 27 529 GRAS Transcription Factor family AT1G14920 48.356 1.07e-161 468.0
Sain3g03167 ACH 152 515 GRAS Transcription Factor family AT5G17490 27.559 3.07e-23 100.0
Sain3g03538 . 316 767 GRAS Transcription Factor family AT1G07530 50.552 2.10e-162 481.0
Sain3g03545 ACH 352 600 GRAS Transcription Factor family AT5G59450 55.777 2.36e-103 310.0
Sain3g03546 . 81 255 GRAS Transcription Factor family AT5G59450 32.609 4.60e-11 59.3
Sain3g03547 ACH 20 767 GRAS Transcription Factor family AT1G07530 47.963 0.0 644.0
Sain4g00724 . 28 582 GRAS Transcription Factor family AT2G01570 63.24 0.0 699.0
Sain4g01534 . 86 767 GRAS Transcription Factor family AT1G07530 46.763 0.0 589.0
Sain5g01044 ACH 37 486 GRAS Transcription Factor family AT4G36710 49.576 2.35e-136 401.0
Sain5g01608 . 13 478 GRAS Transcription Factor family AT1G50420 38.38 5.69e-104 315.0
Sain5g01916 . 144 507 GRAS Transcription Factor family AT1G66350 45.119 1.33e-99 313.0
Sain6g01239 . 154 522 GRAS Transcription Factor family AT5G17490 34.586 1.10e-53 186.0
Sain6g01303 . 18 593 GRAS Transcription Factor family AT1G21450 56.655 0.0 624.0
Sain7g01672 . 154 516 GRAS Transcription Factor family AT5G17490 37.047 3.15e-69 229.0
Sain8g01906 . 154 515 GRAS Transcription Factor family AT5G17490 36.387 1.81e-58 199.0
Sain8g02637 . 12 409 GRAS Transcription Factor family AT3G49950 61.722 0.0 515.0
Sain8g02668 ACH 1 530 GRAS Transcription Factor family AT4G37650 55.95 0.0 551.0
Sain8g02878 ACH 37 485 GRAS Transcription Factor family AT4G36710 50.652 4.83e-139 408.0
Sain8g02897 . 1 584 GRAS Transcription Factor family AT5G66770 57.756 0.0 594.0
Sain9g00023 . 40 444 GRAS Transcription Factor family AT1G55580 50.356 7.97e-126 371.0
Sain9g00216 . 53 490 GRAS Transcription Factor family AT5G48150 65.306 0.0 594.0
Sain9g00362 . 161 529 GRAS Transcription Factor family AT1G14920 35.623 8.17e-76 247.0
Sain9g01904 . 2 409 GRAS Transcription Factor family AT3G49950 43.262 6.88e-119 351.0
Sain9g02396 . 1 525 GRAS Transcription Factor family AT4G17230 52.878 0.0 548.0
Sain9g04049 . 14 405 GRAS Transcription Factor family AT5G41920 66.01 0.0 527.0
Sain9g04155 . 26 582 GRAS Transcription Factor family AT2G01570 61.905 0.0 689.0
Sain10g01322 . 1 654 GRAS Transcription Factor family AT1G63100 51.163 0.0 571.0
Sain10g01498 . 170 555 GRAS Transcription Factor family AT4G00150 43.614 2.29e-99 315.0
Sain10g01599 . 128 546 GRAS Transcription Factor family AT3G03450 29.062 6.38e-59 201.0
Sain10g01600 . 173 547 GRAS Transcription Factor family AT3G03450 29.534 1.95e-52 185.0
Sain10g02792 . 92 555 GRAS Transcription Factor family AT4G00150 39.429 4.21e-103 323.0
Sain11g00147 . 31 640 GRAS Transcription Factor family AT5G52510 41.587 2.96e-131 397.0
Sain11g00149 . 31 640 GRAS Transcription Factor family AT5G52510 41.68 9.45e-134 404.0
Sain11g00696 . 86 764 GRAS Transcription Factor family AT1G07530 45.627 0.0 574.0
Sain11g02117 ACH 118 530 GRAS Transcription Factor family AT4G37650 61.017 2.85e-178 508.0
Sain11g02255 ACH 37 486 GRAS Transcription Factor family AT4G36710 50.0 6.37e-137 403.0
Sain11g02631 . 45 545 GRAS Transcription Factor family AT3G03450 65.779 0.0 670.0
Sain11g03767 . 4 482 GRAS Transcription Factor family AT1G50420 65.136 0.0 623.0
Sain12g00020 . 118 489 GRAS Transcription Factor family AT5G48150 61.93 1.29e-166 480.0
Sain12g00099 . 171 545 GRAS Transcription Factor family AT3G03450 34.0 9.53e-63 213.0
Sain12g00142 . 22 444 GRAS Transcription Factor family AT1G55580 47.877 1.72e-120 356.0
Sain12g00243 . 62 490 GRAS Transcription Factor family AT5G48150 64.055 0.0 570.0
Sain12g00564 . 40 490 GRAS Transcription Factor family AT5G48150 60.385 0.0 570.0
Sain12g01989 . 241 651 GRAS Transcription Factor family AT3G54220 80.097 0.0 660.0
Sain13g02689 . 40 444 GRAS Transcription Factor family AT1G55580 48.926 6.95e-118 350.0
Sain14g01628 . 1 482 GRAS Transcription Factor family AT1G50420 63.485 0.0 607.0
Sain15g00152 . 73 713 GRAS Transcription Factor family AT2G37650 51.187 0.0 650.0
Sain15g00891 ACH 25 767 GRAS Transcription Factor family AT1G07530 47.947 0.0 650.0
Sain15g01315 . 283 650 GRAS Transcription Factor family AT3G54220 54.717 4.87e-142 421.0
Sain16g00453 . 17 714 GRAS Transcription Factor family AT2G37650 50.275 0.0 649.0
Sain16g00862 ACH 25 767 GRAS Transcription Factor family AT1G07530 45.971 0.0 595.0
Sain16g01983 ACH 242 584 GRAS Transcription Factor family AT5G66770 28.169 6.04e-23 100.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Sain GRAS 1.9e-124 CL0063 TF GRAS