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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00568 ATGTTTCTTGTTTCCTACCAAAAATTTTCAAACCCTTCTTCATCTTCCCTCCAAACTTCAAAAATCAAACTCACACCTCCATTAATTCACTCTCTATTTATATCCAACTCAAAACCACGCCTCAATCTCAACGCCCCACTTCCCAATAACAACAACATGTCGCTGAAACCCACTCTTAATCACAGTGATCGCGATCTCATCGCCCACCCTCTTCGTCCTTCCGGCGAGATTCATGTCATCGTCGGCCCTATGTTTGCCGGTAAAACTACAGCTCTTCTTCGCAGGATCAAATCTGAAGGAGCTAATGGCAGGAAGGTAGCAATGATAAAGTCTAGCAAAGATAACCGATATGCTGTAGATTCAGTTGTAACTCATGATGGGACAAAATACCCATGTTGGGCTCTGCCTGATTTGTTATCTTTCAAACAAAAACTTGGAGAAGAAGCTTATGAAAAGCTGGATGTTATTGGCATAGATGAGGCTCAATTCTTTGATGATCTCTATGACTTTTGTTGTAAAGCTGCTGACCATGATGGAAAAACTGTTATAGTTGCTGGCCTTGATGGTGATTACTTAAGAAGGAACTTTGGTCCAGTTCTTGATCTAGTACCCCTTGCTGATACCATAACCAAATTAACCGCTCGATGTGAACTTTGCGGCAAACGAGCCCATTTCACCTTAAGGAAAACCAACGAGACCAAAACCGAACTCATAGGTGGCGCTGATGTGTACATGCCCGTTTGCCGCCAGCATTATGTTAACGGACAAATAGTGATCAAAGCTGCTAGAAATGTTCAAGATGAATCTCATAAGTTTCAGAGCGAACAGAACAAGAACCAATCTCAACTATTGTAA 855 41.87 MFLVSYQKFSNPSSSSLQTSKIKLTPPLIHSLFISNSKPRLNLNAPLPNNNNMSLKPTLNHSDRDLIAHPLRPSGEIHVIVGPMFAGKTTALLRRIKSEGANGRKVAMIKSSKDNRYAVDSVVTHDGTKYPCWALPDLLSFKQKLGEEAYEKLDVIGIDEAQFFDDLYDFCCKAADHDGKTVIVAGLDGDYLRRNFGPVLDLVPLADTITKLTARCELCGKRAHFTLRKTNETKTELIGGADVYMPVCRQHYVNGQIVIKAARNVQDESHKFQSEQNKNQSQLL 284
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00568 284 FunFam Thymidine kinase 71 212 - -
Sain12g00568 284 Pfam Thymidine kinase 75 252 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Sain12g00568 284 Gene3D - 69 212 IPR027417 -
Sain12g00568 284 FunFam Thymidine kinase 213 255 - -
Sain12g00568 284 ProSitePatterns Thymidine kinase cellular-type signature. 239 252 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Sain12g00568 284 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 255 - -
Sain12g00568 284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 213 IPR027417 -
Sain12g00568 284 Gene3D - 213 254 - -
Sain12g00568 284 PANTHER THYMIDINE KINASE 69 275 IPR001267 GO:0004797(PANTHER)|GO:0004797(InterPro)|GO:0005524(InterPro)|GO:0046104(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00568 K00857 thymidine kinase [EC:2.7.1.21]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:12702208 Sain14g02471 Sain-Chr14:104968481 dispersed