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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00571 ATGGCTATAACCATAACCTTTGGGCTCACCCTATTTTTTCACATTCTTGCATCTAATTTCAACATATCACCCGCAAGAACGTGTTCAAATCACAAATTCACAGCTAAAAGAGTCTACAGTTCTTGCCAAGATCTTCCCCATCTATCGGCCCATCTCCACTGGACCTACAACGCATCCACAGGCCAAGCCCAGATCGCGTATAGAGCGAGACAAGTGTCCTCCGGATGGGTTGCGTGGGCCATCAACCCGAACCAGATAGGTATGGTTGGGTCAGAAGCACTGGTGGCTTTCCACAACAGTAACGGGAGCATGGTAGCATATCCAACAATAATAACAAGTTACAGCCCGTCAATGCTGCCTGGAGTTCTTAGCTTTCAAGTTTCGCATCTATCTACCGAGTACTCGAATAATGAGATTACCATTTATGCTGTTGTGGGCCCGTTTGCAGGTGGGTCCCTTGTTAACCAAGTATGGCAAGCGGGGAGCTTGGTTTTGGATGATATCCCGCAAATGCACGCTGTTTCCCAGCAAAATCTTCAATCAACAGGGGAGCTCGATTTCTTATTGGGATAG 573 47.12 MAITITFGLTLFFHILASNFNISPARTCSNHKFTAKRVYSSCQDLPHLSAHLHWTYNASTGQAQIAYRARQVSSGWVAWAINPNQIGMVGSEALVAFHNSNGSMVAYPTIITSYSPSMLPGVLSFQVSHLSTEYSNNEITIYAVVGPFAGGSLVNQVWQAGSLVLDDIPQMHAVSQQNLQSTGELDFLLG 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00571 190 CDD DOMON-CIL1-like 39 188 IPR045265 -
Sain12g00571 190 ProSiteProfiles DOMON domain profile. 48 161 IPR005018 -
Sain12g00571 190 Pfam Protein of unknown function (DUF568) 88 187 IPR045265 -
Sain12g00571 190 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 11 188 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00571 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138775 Sain12g00571 Sain13g02235
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:12717833 Sain9g02404 Sain-Chr9:145619769 dispersed
Sain Sain-Chr12:12717833 Sain12g00572 Sain-Chr12:12719143 tandem
Sain Sain-Chr12:12717833 Sain13g02235 Sain-Chr13:129207329 wgd