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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00572 ATGACCATGGTTTTAAGCTCTGCATCCATTATATTCATATCCATCATTCTTGTTTCTTTTTTCTTCACTTCATCTGCTCAAACCTGTTCAAACCACACTTTTACATCCAAAAGGGTCTTCACTTCTTGCCAAGATCTTCCATATCTCAATGCCCATCTACACTGGACCTATTTCAAATCCTCCAAACAAGCCAAGATCGCGTTTCGAGCCCAACACACCCCCAACGGATGGACAGCGTGGGCAATCAATCCGAACCGACGAGCCATGGTTGGATCACAGGCCCTGCTGGCTTTTCGCGACAGTAAAGGCAGGATGTCGGCATATACAACATTGATCACCGGATACAATCCGTCAATGCAGCCGAGGAAACTTCAGTTCCGTGTTTCGAAGCTCTCGGCGGAGTATGCAAACAACGAGTTCACCATTTTCGCGGTTGTGGGCCCGCTGGTTAACGGGCCTGTGGTGAATCAAGTGTGGCAAGTTGGGAGCTTGGATCGGAATGGTGTCCCCCAAATGCATGCAATGGAGTTGGAAAATCTTCAATCCACAGGGGTCATTGATTTTTCATCAAGTCCTTAG 579 47.5 MTMVLSSASIIFISIILVSFFFTSSAQTCSNHTFTSKRVFTSCQDLPYLNAHLHWTYFKSSKQAKIAFRAQHTPNGWTAWAINPNRRAMVGSQALLAFRDSKGRMSAYTTLITGYNPSMQPRKLQFRVSKLSAEYANNEFTIFAVVGPLVNGPVVNQVWQVGSLDRNGVPQMHAMELENLQSTGVIDFSSSP 192
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00572 192 CDD DOMON-CIL1-like 40 190 IPR045265 -
Sain12g00572 192 Pfam Protein of unknown function (DUF568) 89 188 IPR045265 -
Sain12g00572 192 ProSiteProfiles DOMON domain profile. 49 162 IPR005018 -
Sain12g00572 192 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 9 191 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00572 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:12719143 Sain14g02463 Sain-Chr14:104618577 dispersed
Sain Sain-Chr12:12717833 Sain12g00572 Sain-Chr12:12719143 tandem