AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00573 ATGGGTAAATTCTTAAGTCTTCTTTTTTGCGTTCTGATTTCGAATTTAGCCCAATTTTATGCTCAAAATTGCAGCAATTATGCCTTTTCTAACAACACCATCTACGCCTCATGTGTCTCTTTACCTGTTTTGAACACGCATCTCCACTGGAATCTCCACCCAAATCGCACCGTCGACGTGGCTTTCCGACACACTGGATCCAATTCATCTCAATGGGTTGCGTGGGGACTTAATATTAACGGGTCGCGTATGATTGGGACTCAAGCTCTTGTGGCTGTTACCAGCTCAAACGGGTTGGTTCGGGCTTATACCACATCGGTAACCGGGTTTGGAACCAGTTTGCAACCCGGAAATTTGAGTTTTGGGGTGGAAGGGATAAGGGCGCAGAGTGTTAGTGGAGATGTGGTGATTTTTGCGACGTTGGTGTTGCCAAGTGGACGGACGAGATTTAATCAGACGTGGCAGGTGGGTCCGGTTACTAATGGAACTCCAACGATTCATCCGATGGGGAATGATAATCGGGGTTCTTTTGGAACGGTGGATTTTTCAACCGGTGATGCTAGTGGGTCGCCGCCGGCGCCGACTCCGACGATACCGGCGACACCGACGACGGGAAATGATTGCAGCAATTTTGCCTTCGCCAACAACACAAACTACGTCACATGCGTTTCTTTACCTGTTTTGAACTCGCATCTCAACTGGAACTACAACATCAACCGCACCGTCGATGTGGCTTTCCGGCATGCTGGATCCGAAACATCTCAATGGGTTGCTTGGGCGCTCAACCTTCAACGGTCGGGTATGCTTGGGGCTCAAGCTCTTGTGGCTGTAACCAGCGCAGACGGGTCGGTTCGGGCTTATACTTCATCCGTAGACGGCTATGGAACTAGTCTGCAACCCAGCAACTTGAGTTTTGAAGTGCCCAGGATAAGTGCGGAGCGGGTCGGTGGCGATGTGGTGATTTACGCCACCATCGTGTTGCCTAATGAAGGGACGACATTTAATCAGGTATGGCAGGTGGGTCCAGCTAATGGCGGAAATCCGACTATTCACCCGTTGACGGCTGATAATCGGGGTTCTGCCGGAACGGTGAATTTTCTAACCGGTCAGGCCGACGGCGCCGGTAATGTTGGTGGGTCCCGGCAGCGGCGGAGAAACACTCATGGAGTGTTGAATGCGGTTAGTTGGGGAGTATTGATGCCCATGGGAGCCATGGCAGCAAGATATTTGAAGGTGTTTAAAATAGCTAATCCAGCCTGGTTTTACATCCATGCTGCTTGCCAAACTTCAGCCTATATCGTCGGTGTTGCTGGATGGGCCACCGGACTCAAACTTGGCGGTGACTCTACCGGAATCCGATACAATAAGCACCGGAACATTGGGATCACCCTCTTTGCAATTGGAACACTTCAGGTTTTTGCCCTTCTTTTGAGGCCTAAACCGGATCACAAATACAGACTTTACTGGACCATCTACCACCAGACCCTTGGATACTCGGTGATCGTTCTGAGCATTATCAATGTGTACGAAGGGCTTGATATCTTGGACCCGGAGAAGAAGTGGAAGAATGCGTACACGGGAATACTAATCTCTTTGGGGGTTATGACAGTTGTGTGGGAAGCTTTAACATGGTACATTGTTTTGAAGAGGAAGCAGGAAGATAAAAGAACACATGCAGGAGCCAATGGAGTCAATGGTTCGTCGTATGCTGCCAATGGATACGGGCAGTCGGCATAG 1737 49.8 MGKFLSLLFCVLISNLAQFYAQNCSNYAFSNNTIYASCVSLPVLNTHLHWNLHPNRTVDVAFRHTGSNSSQWVAWGLNINGSRMIGTQALVAVTSSNGLVRAYTTSVTGFGTSLQPGNLSFGVEGIRAQSVSGDVVIFATLVLPSGRTRFNQTWQVGPVTNGTPTIHPMGNDNRGSFGTVDFSTGDASGSPPAPTPTIPATPTTGNDCSNFAFANNTNYVTCVSLPVLNSHLNWNYNINRTVDVAFRHAGSETSQWVAWALNLQRSGMLGAQALVAVTSADGSVRAYTSSVDGYGTSLQPSNLSFEVPRISAERVGGDVVIYATIVLPNEGTTFNQVWQVGPANGGNPTIHPLTADNRGSAGTVNFLTGQADGAGNVGGSRQRRRNTHGVLNAVSWGVLMPMGAMAARYLKVFKIANPAWFYIHAACQTSAYIVGVAGWATGLKLGGDSTGIRYNKHRNIGITLFAIGTLQVFALLLRPKPDHKYRLYWTIYHQTLGYSVIVLSIINVYEGLDILDPEKKWKNAYTGILISLGVMTVVWEALTWYIVLKRKQEDKRTHAGANGVNGSSYAANGYGQSA 578
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00573 578 Gene3D - 363 558 - -
Sain12g00573 578 ProSiteProfiles DOMON domain profile. 228 341 IPR005018 -
Sain12g00573 578 SMART 561-7 387 512 IPR006593 -
Sain12g00573 578 FunFam Cytochrome b561 and DOMON domain-containing protein 366 556 - -
Sain12g00573 578 Pfam Protein of unknown function (DUF568) 268 366 IPR045265 -
Sain12g00573 578 Pfam Protein of unknown function (DUF568) 84 182 IPR045265 -
Sain12g00573 578 CDD DOMON-CIL1-like 35 184 IPR045265 -
Sain12g00573 578 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 203 552 - -
Sain12g00573 578 CDD DOMON-CIL1-like 219 368 IPR045265 -
Sain12g00573 578 ProSiteProfiles DOMON domain profile. 44 157 IPR005018 -
Sain12g00573 578 Pfam Eukaryotic cytochrome b561 388 512 IPR006593 -
Sain12g00573 578 ProSiteProfiles Cytochrome b561 domain profile. 347 548 IPR006593 -
Sain12g00573 578 CDD Cyt-b561-FRRS1-like 360 541 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00573 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138776 Sain12g00573 Sain3g00466
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:12749692 Sain13g02235 Sain-Chr13:129207329 dispersed
Sain Sain-Chr12:12749692 Sain3g00466 Sain-Chr3:11065730 wgd