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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00578 ATGTCGTTGGCCATTGAAGCTGTTTCTAGTTCCACTAACATGGGGCTTGAGGAAAATAATGAAGGAGAAAAGAGTAAATTTGAAGAGAATGGAGTAGATGAAAAAGAAAGTATGAAGAGAGTTGGGAGTGAATCCTCTTTTTATGAAACTGAAGATGAAGAAGAAGATGCAGAGGATAAAAAAATTGAATTGGGTCCTCAGTGCACCCTCAAGGAACAAATTGAAAAGGATAAGGATGATGAGAGCCTGAGAAAGTGGAAAGAACAGCTTCTTGGAAATGTTGATATTAATGATGTTGGAGAATCACTGGAACCAGAAGTGAAGATACTTGTTCTTTCGATATTATCTCCAGGGAGATCTGAGATTGTTCTTCCTATACCCGAAGATGGAAAACCTAAAGGCCCATGGTTTACATTAAAAGAAGGTTGTCGTTATAGCCTCCGATTCTCCTTTCAAGTCAGCCATAACATTGTTGCGGGTTTAAAGTACACCAATAACGTGTGGAAAACCGGCGTCAAGGTGGATAGCGCGAAACGGATGCTTGGTACTTTTAGTCCTCAGCAAGAAGCATACACTTATGACATGCCTGAAGAGACCACCCCTTCTGGATATTTTGCAAGAGGCTCTTACTCTGCTAAAACAAAGTTTGTTGACGATGACAACAAATGTTACTTGGAGATCAACTATACTTTTGATATCCGGAAAGATTGGGCAAGCGTTTAA 723 39.97 MSLAIEAVSSSTNMGLEENNEGEKSKFEENGVDEKESMKRVGSESSFYETEDEEEDAEDKKIELGPQCTLKEQIEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKILVLSILSPGRSEIVLPIPEDGKPKGPWFTLKEGCRYSLRFSFQVSHNIVAGLKYTNNVWKTGVKVDSAKRMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEINYTFDIRKDWASV 240
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00578 240 Gene3D Coagulation Factor XIII, subunit A, domain 1 58 239 IPR024792 -
Sain12g00578 240 PANTHER RHO GDP-DISSOCIATION INHIBITOR 42 237 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Sain12g00578 240 MobiDBLite consensus disorder prediction 1 64 - -
Sain12g00578 240 SUPERFAMILY E set domains 44 237 IPR014756 -
Sain12g00578 240 MobiDBLite consensus disorder prediction 1 18 - -
Sain12g00578 240 FunFam Rho GDP-dissociation inhibitor 1 60 239 - -
Sain12g00578 240 Pfam RHO protein GDP dissociation inhibitor 50 236 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Sain12g00578 240 PRINTS RHO protein GDP dissociation inhibitor signature 190 202 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Sain12g00578 240 PRINTS RHO protein GDP dissociation inhibitor signature 174 189 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Sain12g00578 240 PRINTS RHO protein GDP dissociation inhibitor signature 216 233 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Sain12g00578 240 PRINTS RHO protein GDP dissociation inhibitor signature 157 173 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Sain12g00578 240 MobiDBLite consensus disorder prediction 19 47 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00578 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
138781 Sain12g00578 Sain13g02229
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr11:25804521 Sain12g00578 Sain-Chr12:12821066 dispersed
Sain Sain-Chr12:12821066 Sain9g00093 Sain-Chr9:2331389 dispersed
Sain Sain-Chr16:3661355 Sain12g00578 Sain-Chr12:12821066 transposed
Sain Sain-Chr12:12821066 Sain13g02229 Sain-Chr13:129059852 wgd