AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00593 ATGCGATTCTCCATGGCAGCAATCATAAACCCTAGCTTCCCATCTCTTCCCCCATTTCACCAATCCACTTCCCACCCCCCTTCATACAAAATCCCCCCTACAATAACACTTCAAAAACCAACAAAACCCCTCGATTCTTCCATAAAATCGGTGAACAATTCTGGGTTTTTATCAGCAATTGGGAACGCAATTGAAGAACAGGAGTACAGGAAAGCTAGGGCTGAGGTTATCCGAAAAGGAACAGGGTTAGAAGGTTACACAATTGAGGGTATTTCAATTGGGGGTCATGAAACTTGTGTTATTGTTCCTGAATTCAAGTGTGCATTTGATATCGGAAGGTGCCCAGCAAGAGCTGTTGCCATGAATTTCTTGTTTATTACTCACGCCCACCTTGATCACATTGGTGGGCTACCGATGTATGTTGCAACTCGTGGTCTATACAACTTGAGTCCTCCAACTGTATTTGTGCCTCCTTCCATTAAAGAAGATGTCAAAAGTTTGATGGAGCTTCACAGGAAGATGGGTCAGGTGGAGTTAAATCTTGATTTGGTTGCATTGGATGTAGGAGAAACATACGAGCTACGAAACGACCTTGTTGTACGCCCGTTTAAAACTCATCACGTGATCCCAAGTCAGGGTTATGTTATTTACTCGGTTCGCAAGAAGCTAAAGAAGCAATATGCTCATTTGAAAGGAAGGGAGATTGAGAAAAAGAAGAAATCTGGTGTTGCGATCACAGATATCATATTGTCTCCGGAGGTGGCATTCACCGGAGATACAAATTCTGATTTTCTACTTGATCCACGAAGTTCTGATGCCTTGAGGGCCAAAGTGTTAATAACTGAGGCGACCTTTTTGGACGAGAAATGCAACATTGAGCATGCACGAGAGCATGGTCACATGCATATTGATGAGATTACCGAGCACGCAAAGTGGATTAGGAACAAAGCAATTCTTTTGACTCATTTCTCCTCTCGCTACCATATAGAGGATATACGTCAAGCTGCGGCGAAGTTGCAGTCGAAGATTCAGGGAAAAGTGGTTCCGCTTACGGAAGGTTTTAGATCAATGTATTCGACATAG 1083 43.21 MRFSMAAIINPSFPSLPPFHQSTSHPPSYKIPPTITLQKPTKPLDSSIKSVNNSGFLSAIGNAIEEQEYRKARAEVIRKGTGLEGYTIEGISIGGHETCVIVPEFKCAFDIGRCPARAVAMNFLFITHAHLDHIGGLPMYVATRGLYNLSPPTVFVPPSIKEDVKSLMELHRKMGQVELNLDLVALDVGETYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYAHLKGREIEKKKKSGVAITDIILSPEVAFTGDTNSDFLLDPRSSDALRAKVLITEATFLDEKCNIEHAREHGHMHIDEITEHAKWIRNKAILLTHFSSRYHIEDIRQAAAKLQSKIQGKVVPLTEGFRSMYST 360
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00593 360 Gene3D - 86 355 IPR036866 -
Sain12g00593 360 Pfam Beta-lactamase superfamily domain 120 323 IPR001279 -
Sain12g00593 360 SUPERFAMILY Metallo-hydrolase-oxidoreductase 119 340 IPR036866 -
Sain12g00593 360 PANTHER TRNASE Z TRZ1 41 354 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00593 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:13553664 Sain7g01397 Sain-Chr7:101877724 dispersed