AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00620 ATGGAAGACACACCTGCAACCAACCTCAGCGCCGGCGGCAACTCTCACCCGGACATGATCACAGCATTCTCAGAAATAACTTCAGCTTCCAAAGAAGAAGCCATCTTCTTCCTCGAATCACATAATTTCGATCTCGATTCCGCAGTTTCCACCTTCTTTGAAACCGCTACCGCCGCCGAACACCCTCCCGTGTCTGCCCGAAACCCTAACCCTAACCCTAACCCTTCTGATACCCATTCCCTCTCCTTTTCTCCGTCGTCTTCTCCGTCTCGCTCCCGATCAGCATCCCCACCGCCTTCTCTCGGATTACAACAACCGGGCGGTGTTAATCCGTACAATTTACGATCTAGGAATACCGCTGAGGATAAGAAGCCATCCGGTAGTCGGTCCACTGGACGCATACGGACTTTTTCAGATCTGAATCGATCGGGTGATGGCTCTGGAAGCGATTCAGATGAACCTCAGGAGTATTATACTGGTGGTGAAAAGAGTGGAATGCTGGTTCAAGATCCATCAAAGATGAATGATGTGGAATCATTGTTTAACCAAGCTAGACGAGCAGGAGCCGAAGAAGGAACTCTTGATCAACTCCAACCATCTTCAAGCTCCAGAAGCTTTGCTGGAAGAGGAAGATTATTATCTGGAGAGACAACATCGGCTCCTCCTCAGCAGTCTGAACCTGAAGTTCACACACACACCATCACTTTCTGGACCAATGGTTTCACTGTTGATGATGGTCCTTTGAGGAGGCTTGATGACCCTCAAAATGCATCTTTCTTGGAGAGCATAAGGAAGTCCGAGTGTCCAGAAGAACTTAGGCCTGCAAAAGAAAGAGCTCCGGTCCATGTTAGTCTTGTGAGGAAGTTGGAGGACTACCCTGTCCAGAAACAACGACACACTGCCTTTGTGGGTGTGGGTCGAACTCTAGGCACCACCACGTCTTCTGAGGACATGGCTTCCACCACCCCAGTCCCGGCCTCTACCGCTGCTCCGGCCCCATCCTTAGGTCTGGTGGTGGATGACACATTGCCCTCCACTTCTATTCAACTGCGATTGGTGGATGGGACCCGTATGGTTTCACGCTTCAATTTCCATCACACGATCAGTGATATCCGGTCTTTCATTGATGCATCGAGGCCTGGAGGGCCACGGGCTTATCAGCTACTGACGATGGGATTTCCTCCAAAGAAGCTTAACGATTTGAAGCAGACGATCGAAGAGGCTGGACTAGCGAATTCGGTGGTGATCCAGAAACTCTAA 1260 50.32 MEDTPATNLSAGGNSHPDMITAFSEITSASKEEAIFFLESHNFDLDSAVSTFFETATAAEHPPVSARNPNPNPNPSDTHSLSFSPSSSPSRSRSASPPPSLGLQQPGGVNPYNLRSRNTAEDKKPSGSRSTGRIRTFSDLNRSGDGSGSDSDEPQEYYTGGEKSGMLVQDPSKMNDVESLFNQARRAGAEEGTLDQLQPSSSSRSFAGRGRLLSGETTSAPPQQSEPEVHTHTITFWTNGFTVDDGPLRRLDDPQNASFLESIRKSECPEELRPAKERAPVHVSLVRKLEDYPVQKQRHTAFVGVGRTLGTTTSSEDMASTTPVPASTAAPAPSLGLVVDDTLPSTSIQLRLVDGTRMVSRFNFHHTISDIRSFIDASRPGGPRAYQLLTMGFPPKKLNDLKQTIEEAGLANSVVIQKL 419
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00620 419 MobiDBLite consensus disorder prediction 188 229 - -
Sain12g00620 419 CDD UBX-UBXN2 347 418 - -
Sain12g00620 419 Gene3D - 294 419 - -
Sain12g00620 419 SMART faf-3 226 319 IPR012989 -
Sain12g00620 419 FunFam Plant UBX domain-containing protein 4 294 419 - -
Sain12g00620 419 SUPERFAMILY UBA-like 15 54 IPR009060 GO:0005515(InterPro)
Sain12g00620 419 ProSiteProfiles UBX domain profile. 341 418 IPR001012 GO:0005515(InterPro)
Sain12g00620 419 SMART ubx-3 340 419 IPR001012 GO:0005515(InterPro)
Sain12g00620 419 PANTHER UBX DOMAIN CONTAINING PROTEIN 18 418 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Sain12g00620 419 MobiDBLite consensus disorder prediction 130 154 - -
Sain12g00620 419 Gene3D - 14 56 - -
Sain12g00620 419 MobiDBLite consensus disorder prediction 60 169 - -
Sain12g00620 419 Pfam UBA-like domain 19 57 - -
Sain12g00620 419 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 223 314 IPR036241 -
Sain12g00620 419 Pfam SEP domain 234 307 IPR012989 -
Sain12g00620 419 Pfam UBX domain 344 418 IPR001012 GO:0005515(InterPro)
Sain12g00620 419 FunFam Plant UBX domain-containing protein 4 229 291 - -
Sain12g00620 419 Gene3D SEP domain 229 291 IPR036241 -
Sain12g00620 419 MobiDBLite consensus disorder prediction 194 208 - -
Sain12g00620 419 SUPERFAMILY Ubiquitin-like 302 417 IPR029071 -
Sain12g00620 419 MobiDBLite consensus disorder prediction 71 116 - -
Sain12g00620 419 ProSiteProfiles SEP domain profile. 229 293 IPR012989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00620 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr1:106092417 Sain12g00620 Sain-Chr12:14229733 wgd