Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00624 | ATGGATTTTGAATTGAGAAGAGCGACAGAGAAATTACAGAAAGAGCAAAAGGATAGGAAAGAGAAGGCTAAGTTAAGGTTGGAACGAGAGAGGAAAGCCAAACAAGAAGCTCTTCGTCAGCGTGAGGCGATCGAGGCTGCTCAGCGATCTCGTAGAATCGATGCCATGGAAGCCCAACTTAAGGCAGACCAGCAGATGGAAGAAAATATACTTGCTGGGAGAGGAATTTCCTTTTATCGTGCTCTAGAAGCTGCACCATTTGAGGGTTCAGGAGACAAGATCAAACTCCCGCCTTCCTGTTTCACCGAATTATCCGAGCAAGGCGCTTTCGACAAGGGCCCACTCCATTTCCACCTGTCAGTAGCCCACCAAGATGAATCATCTTCGAAAGCTGAAACTCTAGCCCACGGGTCGACCCATGCTGGCGTCTTGGAGTTCACTGCCGAAGAAGGTTCCGTCGGGATCCCTCCTCACATTTGGAACAACTTATACTCCAAACAAGATCCCAAAACTCCTTTAGTCGAAGTACGATACGTGTGGCTAGCAAAAGGAACATATGCAAAGCTTCAATCAGAAGAACTCGGGTTCTCAGATATACCCAACCACAAAGCTGTCCTCGAAACAACCCTTCGCCAGCATGCAACTCTTTCTCAAGACGATGTTTTGACGGTCAAACACGGCGTGTTGACCCATCATTTGCGCGTTCTCGAGCTCAAACCGTCGCCAAGTGTATCTGTTCTCGAAACAGATATCGAAGTCGACATTGTGGGTCCCGATTCACTTCCGGAAAGAAGCAATCAGCACGTGCTGAAACCACTAACGTTAGGGAAACCCGAATCTGGAGTTATAAATGAAAAAGAATACATTTATTATAAGTTTTCGATAGATAACGACACATGGGGAAGAATCTCTTCTGGGGATGCTGAAATCGAAGTCAAACTAGATTCTGAAGCAAAAGATGGAGATACGGATCTTTATCTTTCACAACACCCGCTATTGTTTCCGAACACCCATCAGCATGGTTGGTCTTCTCATGATATGGGTTCGAAATCTTTGGTTCTTGGCTCAAAAGATCACAACTTTGGTGCTGGAACTTATAGTGTTGGTGTATATGGGTTCAAAGGAACCACAAAATATCATGTTTTAGTAACTTTGCAAGATTCTTCTAACGTAAAAATGGGTCAACAACCTGTGTCGTCTTCTTCACAGGGGTCAACGGCGGATACTGTAGAGTGCAGCAATTGCAAGCATTATATACCCTTGAGAACCATAGCACTTCATGAGGCGTATTGTAGAAGACATAATGTTATCTGTCAGCATGCGGGTTGTGGTGTTGTTCTCAGGATCGAAGAGGTGAAGAACCATGTGCACTGCGGGAAATGTGGACTCGCGTTTCATAGTGACGAGATTGGAAAACATATGAAAGTGTTCCATGAGCCGCTTTGCTGTCCGTGTGGCGCCGTTCTTGAGAAAGCACAGATGGTGGAACACCAGAAGTCAGATTGCCCGTTACGGCTTGTTACATGTCGGTTTTGTGGGGACATGGTGGAAGCGGGGTCGTTGGCTGTGGATGCACGTGATCGGTTAAGGGGACTCTCTGAGCATGAGAGTCTTTGTGGGTCGAGAACTGCCCCTTGCGACTCGTGTGGCCGAGCAGTCATGTTGAAAGAAATGGAGATTCATCAAATTGCTGTTCACCAGAAGAATTGA | 1710 | 46.26 | MDFELRRATEKLQKEQKDRKEKAKLRLERERKAKQEALRQREAIEAAQRSRRIDAMEAQLKADQQMEENILAGRGISFYRALEAAPFEGSGDKIKLPPSCFTELSEQGAFDKGPLHFHLSVAHQDESSSKAETLAHGSTHAGVLEFTAEEGSVGIPPHIWNNLYSKQDPKTPLVEVRYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSQDDVLTVKHGVLTHHLRVLELKPSPSVSVLETDIEVDIVGPDSLPERSNQHVLKPLTLGKPESGVINEKEYIYYKFSIDNDTWGRISSGDAEIEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDMGSKSLVLGSKDHNFGAGTYSVGVYGFKGTTKYHVLVTLQDSSNVKMGQQPVSSSSQGSTADTVECSNCKHYIPLRTIALHEAYCRRHNVICQHAGCGVVLRIEEVKNHVHCGKCGLAFHSDEIGKHMKVFHEPLCCPCGAVLEKAQMVEHQKSDCPLRLVTCRFCGDMVEAGSLAVDARDRLRGLSEHESLCGSRTAPCDSCGRAVMLKEMEIHQIAVHQKN | 569 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00624 | 569 | Gene3D | - | 71 | 181 | IPR042299 | - | |
| Sain12g00624 | 569 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Sain12g00624 | 569 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 476 | 527 | IPR013083 | - | |
| Sain12g00624 | 569 | PANTHER | UBIQUITIN FUSION DEGRADATON PROTEIN 1 | 1 | 541 | IPR004854 | GO:0006511(InterPro)|GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0071712(PANTHER) | |
| Sain12g00624 | 569 | Pfam | TRAFD1-XAF1, zinc finger | 532 | 561 | IPR049439 | - | |
| Sain12g00624 | 569 | Gene3D | - | 183 | 256 | - | - | |
| Sain12g00624 | 569 | Pfam | Ubiquitin fusion degradation protein UFD1 | 90 | 258 | IPR004854 | GO:0006511(InterPro) | |
| Sain12g00624 | 569 | Coils | Coil | 5 | 50 | - | - | |
| Sain12g00624 | 569 | SUPERFAMILY | TRAF domain-like | 410 | 467 | - | - | |
| Sain12g00624 | 569 | Gene3D | - | 279 | 391 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00624 | K14016 | ubiquitin fusion degradation protein 1 |