AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00624 ATGGATTTTGAATTGAGAAGAGCGACAGAGAAATTACAGAAAGAGCAAAAGGATAGGAAAGAGAAGGCTAAGTTAAGGTTGGAACGAGAGAGGAAAGCCAAACAAGAAGCTCTTCGTCAGCGTGAGGCGATCGAGGCTGCTCAGCGATCTCGTAGAATCGATGCCATGGAAGCCCAACTTAAGGCAGACCAGCAGATGGAAGAAAATATACTTGCTGGGAGAGGAATTTCCTTTTATCGTGCTCTAGAAGCTGCACCATTTGAGGGTTCAGGAGACAAGATCAAACTCCCGCCTTCCTGTTTCACCGAATTATCCGAGCAAGGCGCTTTCGACAAGGGCCCACTCCATTTCCACCTGTCAGTAGCCCACCAAGATGAATCATCTTCGAAAGCTGAAACTCTAGCCCACGGGTCGACCCATGCTGGCGTCTTGGAGTTCACTGCCGAAGAAGGTTCCGTCGGGATCCCTCCTCACATTTGGAACAACTTATACTCCAAACAAGATCCCAAAACTCCTTTAGTCGAAGTACGATACGTGTGGCTAGCAAAAGGAACATATGCAAAGCTTCAATCAGAAGAACTCGGGTTCTCAGATATACCCAACCACAAAGCTGTCCTCGAAACAACCCTTCGCCAGCATGCAACTCTTTCTCAAGACGATGTTTTGACGGTCAAACACGGCGTGTTGACCCATCATTTGCGCGTTCTCGAGCTCAAACCGTCGCCAAGTGTATCTGTTCTCGAAACAGATATCGAAGTCGACATTGTGGGTCCCGATTCACTTCCGGAAAGAAGCAATCAGCACGTGCTGAAACCACTAACGTTAGGGAAACCCGAATCTGGAGTTATAAATGAAAAAGAATACATTTATTATAAGTTTTCGATAGATAACGACACATGGGGAAGAATCTCTTCTGGGGATGCTGAAATCGAAGTCAAACTAGATTCTGAAGCAAAAGATGGAGATACGGATCTTTATCTTTCACAACACCCGCTATTGTTTCCGAACACCCATCAGCATGGTTGGTCTTCTCATGATATGGGTTCGAAATCTTTGGTTCTTGGCTCAAAAGATCACAACTTTGGTGCTGGAACTTATAGTGTTGGTGTATATGGGTTCAAAGGAACCACAAAATATCATGTTTTAGTAACTTTGCAAGATTCTTCTAACGTAAAAATGGGTCAACAACCTGTGTCGTCTTCTTCACAGGGGTCAACGGCGGATACTGTAGAGTGCAGCAATTGCAAGCATTATATACCCTTGAGAACCATAGCACTTCATGAGGCGTATTGTAGAAGACATAATGTTATCTGTCAGCATGCGGGTTGTGGTGTTGTTCTCAGGATCGAAGAGGTGAAGAACCATGTGCACTGCGGGAAATGTGGACTCGCGTTTCATAGTGACGAGATTGGAAAACATATGAAAGTGTTCCATGAGCCGCTTTGCTGTCCGTGTGGCGCCGTTCTTGAGAAAGCACAGATGGTGGAACACCAGAAGTCAGATTGCCCGTTACGGCTTGTTACATGTCGGTTTTGTGGGGACATGGTGGAAGCGGGGTCGTTGGCTGTGGATGCACGTGATCGGTTAAGGGGACTCTCTGAGCATGAGAGTCTTTGTGGGTCGAGAACTGCCCCTTGCGACTCGTGTGGCCGAGCAGTCATGTTGAAAGAAATGGAGATTCATCAAATTGCTGTTCACCAGAAGAATTGA 1710 46.26 MDFELRRATEKLQKEQKDRKEKAKLRLERERKAKQEALRQREAIEAAQRSRRIDAMEAQLKADQQMEENILAGRGISFYRALEAAPFEGSGDKIKLPPSCFTELSEQGAFDKGPLHFHLSVAHQDESSSKAETLAHGSTHAGVLEFTAEEGSVGIPPHIWNNLYSKQDPKTPLVEVRYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSQDDVLTVKHGVLTHHLRVLELKPSPSVSVLETDIEVDIVGPDSLPERSNQHVLKPLTLGKPESGVINEKEYIYYKFSIDNDTWGRISSGDAEIEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDMGSKSLVLGSKDHNFGAGTYSVGVYGFKGTTKYHVLVTLQDSSNVKMGQQPVSSSSQGSTADTVECSNCKHYIPLRTIALHEAYCRRHNVICQHAGCGVVLRIEEVKNHVHCGKCGLAFHSDEIGKHMKVFHEPLCCPCGAVLEKAQMVEHQKSDCPLRLVTCRFCGDMVEAGSLAVDARDRLRGLSEHESLCGSRTAPCDSCGRAVMLKEMEIHQIAVHQKN 569
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00624 569 Gene3D - 71 181 IPR042299 -
Sain12g00624 569 MobiDBLite consensus disorder prediction 1 26 - -
Sain12g00624 569 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 476 527 IPR013083 -
Sain12g00624 569 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 541 IPR004854 GO:0006511(InterPro)|GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0071712(PANTHER)
Sain12g00624 569 Pfam TRAFD1-XAF1, zinc finger 532 561 IPR049439 -
Sain12g00624 569 Gene3D - 183 256 - -
Sain12g00624 569 Pfam Ubiquitin fusion degradation protein UFD1 90 258 IPR004854 GO:0006511(InterPro)
Sain12g00624 569 Coils Coil 5 50 - -
Sain12g00624 569 SUPERFAMILY TRAF domain-like 410 467 - -
Sain12g00624 569 Gene3D - 279 391 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00624 K14016 ubiquitin fusion degradation protein 1