AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00627 ATGACGGCGAAGAAGAGATCCGTATCTTCTTCTTCGAGGCGCCAAATTCCGCCATTTGTTTCTAAGTTTGTGATCTCATTGTTGATACTCTTTTGTTTCGTCGCCTTTCTCGGACTCTTCTCTCAATTTAAGCTTCAATCGTCCTCCGTACCCACCGGATTTTATTTTGACGACTTCCGTCTCGAAGATTATCGTATGAAGATTGCTTTCCTTTTTCTTGTTCGAGATAATCTCCCTCTCGATTTCCTTTGGCACAACTTCTTTAAGGAAGATGTTTTGAAAAGCTTGATTGAACATTTAAAGTTGACGAGCTTACAGAATGCAGATCCCGAGAATTTCACAATTTACATACACTCGAAGCCTGGTTTTGTGTTTGATGAGTCAGTTACCAGATCAGTCTTCTTCTACAACCGACAGTTGGAAAACAGTGTGGAGGTGGGTTGGGGTAAGCCAACTATGATTGAAGCAGAGAAGCTGCTGTTCAAGGCTGCGCTTAATGATCCAAGCAATCAGATATTTGTTCTCCTCTCTGACAGCTGTGTACCACTATATGATTTCAGTTACATATACACATATCTCATGTCGTCTCCAAGAAGCTTCGTGGACAGCTTCATTGATGTCAAGGAAAATCGCTATAATCCAGAGATGTCCCCTGACATACGTGAAGGCAAATGGCGGAAAGGATCCCAGTGGATCACATTGGTCAGAAGGCATGCGGAGATGGTTGCATATGATCATGTTGTTTTCCCAATCTTTGAGAAACACTGCAAGCGGCGACCACTTCTAGACTTGAGCAAGGGAAACGAGTCTCTTAAAGAACAGCAGCAACACAATTGCATCCCAGATGAACATTATGTTCCCACCTTACTTACAATGCGGGGTGTTGAAGATGAATTGGAGCGAAGAACATTAACCTATTCATTATGGAACCAGTCTACAGAAACGATGAATACACAAGCCTGGCATCCAGTAACGTTTGGTTATGCAAGTGCCAGCCAGAAACATATACAAGATATCAAGGATATCGACCATGTTTATTTCGAGTCTGAGAACCGGACCGAATGGTGTGGTACTAAATCTAGTAGCGGTTCTTGTTACTTGTTTGCGAGGAAGTTCTCGCGTGGTGCAGCTATGCGGCTTCTGACCAACGGGGTGGTTGGTCCGTATGATCCTAACACGTTGTTCCAAGACCTGACATAG 1200 43.5 MTAKKRSVSSSSRRQIPPFVSKFVISLLILFCFVAFLGLFSQFKLQSSSVPTGFYFDDFRLEDYRMKIAFLFLVRDNLPLDFLWHNFFKEDVLKSLIEHLKLTSLQNADPENFTIYIHSKPGFVFDESVTRSVFFYNRQLENSVEVGWGKPTMIEAEKLLFKAALNDPSNQIFVLLSDSCVPLYDFSYIYTYLMSSPRSFVDSFIDVKENRYNPEMSPDIREGKWRKGSQWITLVRRHAEMVAYDHVVFPIFEKHCKRRPLLDLSKGNESLKEQQQHNCIPDEHYVPTLLTMRGVEDELERRTLTYSLWNQSTETMNTQAWHPVTFGYASASQKHIQDIKDIDHVYFESENRTEWCGTKSSSGSCYLFARKFSRGAAMRLLTNGVVGPYDPNTLFQDLT 399
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00627 399 Pfam Core-2-I-Branching enzyme 110 339 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
Sain12g00627 399 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 63 381 IPR044174 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00627 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:14412780 Sain8g02160 Sain-Chr8:141613217 dispersed
Sain Sain-Chr1:105814740 Sain12g00627 Sain-Chr12:14412780 wgd