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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00633 ATGGCATTAAACAGGGGTGGATCTTGTAATCCGGCCTTCGTGAAGATCGGAATTACGTTATTGGGAGTGTGTTTGGTGGGTTATCTACTAGGTCCACCGCTCTACTGGCATTTTCTTGAAGGCTTAGCCGCCGTACGCCGCTCCTCCTCCGCCGCCGCTTCTTGCCCCCCTTGCAACTGCGACTGCGATTCTCAGCCCCTCCTCACCATTTCTCAAGGGCTAAGCAATAATTCTTTCACAGATTGTGCAAAGCACGATCCTGAAGTGAGCGGAGACACAGAAAAGAATTTCGCAGAGCTTCTATCGGAAGAACTGAAGCTACGAGAAGCAGAAGCTTTAGAAAGTCAGCAGCGTGCTGACATGGCGCTCCTCGAGGCCAAGAAGTTGACATCCCAGTATCAGAAAGAAGCGGACAAATGCAATTCAGGAATGGAAACTTGTGAAGAAGCTCGTGAAAAAGCCGAAGCAGCATTAGTAGCACAAAAACAACAAAGCGAAATGTGGGAATTACGAGCCCGGCAAAGGGGCTGGAAGGACGGGGGCGGTGGTAAGTCTGTAAACGTCATATGA 570 50.0 MALNRGGSCNPAFVKIGITLLGVCLVGYLLGPPLYWHFLEGLAAVRRSSSAAASCPPCNCDCDSQPLLTISQGLSNNSFTDCAKHDPEVSGDTEKNFAELLSEELKLREAEALESQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALVAQKQQSEMWELRARQRGWKDGGGGKSVNVI 189
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00633 189 Coils Coil 107 127 - -
Sain12g00633 189 Pfam Protein of unknown function (DUF1068) 12 179 IPR010471 -
Sain12g00633 189 PANTHER EXPRESSED PROTEIN 1 181 - -
Sain12g00633 189 Coils Coil 144 164 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00633 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
138790 Sain12g00633 Sain13g02197
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:14575053 Sain3g02046 Sain-Chr3:130538314 dispersed
Sain Sain-Chr12:14575053 Sain13g02197 Sain-Chr13:128206940 wgd