AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sain12g00638 | ATGGGTACCATATTCAAAGTGAGCTTGCTCTTGTTGTTCCTTCTCTCACCTACTGCATATTCGGCTTCTTCTGGTGGATTGGTTAGAGTTGGACTTAAAAAGAGGAAAGTCAATATACTGAACCAGCCCGGTCAACATGCTGGCTCTAATTATGGGAATGCCAGAAGAAATTACGGTGTCCGTGGTAATTTCAGGGATTCAGACAGTGACATTATTGCTCTAAAGAACTACATGGATGCTCAGTATTATGGTGAGATTGGTATTGGCACTCCACCCCAGAAGTTCACTGTGATTTTTGACACTGGAAGTTCTAATCTGTGGGTCCCTTCTTCAAAATGCTATTTCTCAGTAGCTTGCCTTTTTCACTCAAAGTATAGGTCTAGCCATTCAAGTACCTACAAGAAAAATGGGAAATCCGCTGCAATTCACTACGGAACTGGCTCTATCTCTGGTTTCTTTAGCCAAGATTCTGTCAAACTTGGTGATCTTATTGTTAAAGAGCAGGATTTTATTGAGGCAACCAAAGAGCCTGGCGTCACTTTCTTGGCCGCCAAATTTGATGGTATACTTGGCCTCGGGTTTCAAGAGATATCTGTTGGGGATGCGGTCCCTGTTTGGTACACCATGGTGAACCAAGGTCTTGTTAGCAAACCTGTATTTTCATTTTGGCTAAATCGCAATGCTGATGAGGAGGAAAAAGGGGGTGAACTTGTGTTTGGTGGGGTTGATCCTAATCATTTCAAGGGTGAACACACATATGTCCCCGTGACTCAAAAGGGCTATTGGCAGTTTGAAATGGGTGATGTCCTGATTGATGACAAAACAACTGGATTTTGCGCCAATGGTTGTGCAGCAATTGCTGATTCCGGAACCTCTTTGTTGGCTGGTCCCACAACTGTTGTTGCACAAATCAATCAAGCCATTGGCGCTGTGGGGGTTATGAGCCAACAATGCAAGGCATTGGTTGATCAGTACGGAAAGAGTATGATTGAGATGCTTTTATCAGAGGAACAACCTGAGAAAATCTGCTCCCAAATGAAGTTATGTTCTTTTGCTGGTTCTCATGATACTAGCATGATAATTGAGAGTGTGGTCGACAAGAATAAGGGAAAATCTTCTGGTGTACACGATGAGATGTGTACCTTGTGCGAGATGACAATTGTTTGGATGCAAAACCAGATTAGGCAAAATGAGACTGAAGAAAACATAATTAACTATGTTGATAAGCTTTGTGAGCGGTTGCCAAGTCCAATGGGAGAATCTGCAGTCGACTGTGGCAGTCTTTCCTCCATGCCCAATGTTGCCTTTACCATCGGTGGTAAAACCTTTGACCTCACCCCTGAACAGTATGTCCTGAAAGTTGGGGAAGGAGCAGCAGCGCAATGCATAAGTGGATTCACGGCTATGGATGTGGCACCTCCTCGTGGACCTCTATGGATCTTGGGAGATGTTTTTATGGGTCAATACCACACGGTGTTCGACTATGGTAAATTACGAGTTGGGTTTGCAAAAGCAGCTTGA | 1521 | 43.85 | MGTIFKVSLLLLFLLSPTAYSASSGGLVRVGLKKRKVNILNQPGQHAGSNYGNARRNYGVRGNFRDSDSDIIALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSVACLFHSKYRSSHSSTYKKNGKSAAIHYGTGSISGFFSQDSVKLGDLIVKEQDFIEATKEPGVTFLAAKFDGILGLGFQEISVGDAVPVWYTMVNQGLVSKPVFSFWLNRNADEEEKGGELVFGGVDPNHFKGEHTYVPVTQKGYWQFEMGDVLIDDKTTGFCANGCAAIADSGTSLLAGPTTVVAQINQAIGAVGVMSQQCKALVDQYGKSMIEMLLSEEQPEKICSQMKLCSFAGSHDTSMIIESVVDKNKGKSSGVHDEMCTLCEMTIVWMQNQIRQNETEENIINYVDKLCERLPSPMGESAVDCGSLSSMPNVAFTIGGKTFDLTPEQYVLKVGEGAAAQCISGFTAMDVAPPRGPLWILGDVFMGQYHTVFDYGKLRVGFAKAA | 506 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sain12g00638 | 506 | ProSiteProfiles | Saposin B type domain profile. | 376 | 417 | IPR008139 | - | |
| Sain12g00638 | 506 | PANTHER | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED | 12 | 505 | IPR001461 | GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(PANTHER)|GO:0006508(InterPro) | |
| Sain12g00638 | 506 | Gene3D | - | 313 | 415 | - | - | |
| Sain12g00638 | 506 | ProSiteProfiles | Peptidase family A1 domain profile. | 82 | 503 | IPR033121 | - | |
| Sain12g00638 | 506 | Pfam | Saposin-like type B, region 1 | 379 | 415 | IPR007856 | GO:0006629(InterPro) | |
| Sain12g00638 | 506 | SUPERFAMILY | Acid proteases | 8 | 505 | IPR021109 | - | |
| Sain12g00638 | 506 | FunFam | Vacuolar aspartic proteinase | 397 | 505 | - | - | |
| Sain12g00638 | 506 | Gene3D | Acid Proteases | 242 | 506 | IPR021109 | - | |
| Sain12g00638 | 506 | Gene3D | Acid Proteases | 28 | 241 | IPR021109 | - | |
| Sain12g00638 | 506 | Pfam | Eukaryotic aspartyl protease | 81 | 505 | IPR033121 | - | |
| Sain12g00638 | 506 | Pfam | Saposin-like type B, region 2 | 316 | 349 | IPR008138 | - | |
| Sain12g00638 | 506 | CDD | phytepsin | 72 | 504 | IPR033869 | GO:0004190(InterPro) | |
| Sain12g00638 | 506 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 97 | 108 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Sain12g00638 | 506 | PRINTS | Pepsin (A1) aspartic protease family signature | 88 | 108 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Sain12g00638 | 506 | PRINTS | Pepsin (A1) aspartic protease family signature | 285 | 296 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Sain12g00638 | 506 | PRINTS | Pepsin (A1) aspartic protease family signature | 235 | 248 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Sain12g00638 | 506 | PRINTS | Pepsin (A1) aspartic protease family signature | 479 | 494 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Sain12g00638 | 506 | ProSiteProfiles | Saposin B type domain profile. | 313 | 353 | IPR008139 | - | |
| Sain12g00638 | 506 | FunFam | Lysosomal aspartic protease | 68 | 311 | - | - | |
| Sain12g00638 | 506 | SMART | sapb-4 | 277 | 349 | IPR008139 | - | |
| Sain12g00638 | 506 | SUPERFAMILY | Saposin | 314 | 415 | IPR011001 | - | |
| Sain12g00638 | 506 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 285 | 296 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sain12g00638 | K08245 | phytepsin [EC:3.4.23.40] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 138793 | Sain12g00638 | Sain13g02191 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Sain | Sain-Chr12:14710446 | Sain15g00013 | Sain-Chr15:4293658 | dispersed | |
| Sain | Sain-Chr9:211687436 | Sain12g00638 | Sain-Chr12:14710446 | dispersed | |
| Sain | Sain-Chr9:152302730 | Sain12g00638 | Sain-Chr12:14710446 | transposed | |
| Sain | Sain-Chr12:14710446 | Sain13g02191 | Sain-Chr13:128019691 | wgd |