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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00640 ATGATTTACCTCTTCTTTTCGATTTTATTCATCGAAATGGTGATGATTCTCTTACTTCTGTTCAAAACCCCACTGCGAAAGCTTTTGATTATTGGGATCGATCGTATGAAACGAGGAAGGGCTCCATTGGTTGTGAAATCCGTCGGCGCCACCGTCTTCGTCATCATGATGTACAACGTTTACAGTGTAACGGAAATCCAGAGCCGTCCCCCTGACGCCATTAATCCAACCGATCAAATCATTCTCGCTTACCATATGCTCGAAGCTTCTCTCATGGGATTCTCGCTTTTTCTGTCACTGATGGTGGATAGGCTACATAATTACATAAGAGAACTTCGCATACTTAGAAAGACCATGGAGGCTGCAAAGAAACAAAACCGCGTAGCTGAGGATAGCAAGAACAAGGGTGCAGATGAGGTCAAGATCCTAAACGAAGAAACATCTAGGTTGCAGTCAGAGATCAAAAGGCTGGAAGCTGAATATGAAACGAAGGTAAAAGAGGTGAAATCTGCAGAAGCCAATTCGGTTGCTCTTAAAAATCAATCAGAAGGCTTTCTTCTTGAATATGACCGCCTGCTAGCCGAAAACCAGAATCTTAGAGACCAACTACGCTCCATTGATGAATGCTTGTCTCATTCCAACGGAAAGAAGGATACATGA 660 43.18 MIYLFFSILFIEMVMILLLLFKTPLRKLLIIGIDRMKRGRAPLVVKSVGATVFVIMMYNVYSVTEIQSRPPDAINPTDQIILAYHMLEASLMGFSLFLSLMVDRLHNYIRELRILRKTMEAAKKQNRVAEDSKNKGADEVKILNEETSRLQSEIKRLEAEYETKVKEVKSAEANSVALKNQSEGFLLEYDRLLAENQNLRDQLRSIDECLSHSNGKKDT 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00640 219 Coils Coil 140 174 - -
Sain12g00640 219 Gene3D - 136 199 - -
Sain12g00640 219 PANTHER BCR-ASSOCIATED PROTEIN, BAP 1 200 IPR008417 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0006886(InterPro)|GO:0006888(PANTHER)|GO:0016020(InterPro)|GO:0070973(PANTHER)
Sain12g00640 219 Coils Coil 105 132 - -
Sain12g00640 219 FunFam B-cell receptor-associated protein 29 136 199 - -
Sain12g00640 219 Coils Coil 189 209 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00640 K14009 B-cell receptor-associated protein 31
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Event-related genes

Select Gene_1 Gene_2 Event_name
138795 Sain12g00640 Sain13g02188
138796 Sain12g00640 Sain3g00403
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:14817662 Sain13g02574 Sain-Chr13:137012051 dispersed
Sain Sain-Chr1:105448462 Sain12g00640 Sain-Chr12:14817662 wgd
Sain Sain-Chr12:14817662 Sain13g02188 Sain-Chr13:127882286 wgd
Sain Sain-Chr12:14817662 Sain3g00403 Sain-Chr3:9621038 wgd