AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sain12g00656 ATGCCTATAACCGGACCCCATTCTTCAGCTCTCCTCCGTCGAGCTTCGTCTAGGTCCTCCGCCACCAGGCACTTTCACTCTTCACTTTCAGGTAAATCTCCATCTCCATCACCATCACCTTCACCACTCGCATCTCACTCCCGACCTCATGCAACCGCATCCGCCGCTTTTCGCTCTCTCCGATCTCCATGGAGCCACGGCGTCGATTGGAAGTCTCCAGCTTCTCTGTCTTCTCAGATCAGGACTACTGCTTCTCCTGTCCTTGACCGTTTCCACCGCACTCTCGCTACTATCGCCTCCAAGAATGTTTTCAATGGAATTTTGACTGGTCTCCCAAAGCCTGGAGGTGGGGAGTTTGGAAAGTTCTATAGTTTGCCTGCTCTGAACGATCCAAGAGTTGACAAGCTGCCATATTCAATTAGGATCCTCCTTGAATCAGCAATTCGTAATTGTGACAATTTTCAAGTCACCAAGGAAGATGTTGAGAAAATCATTGATTGGGAGAAGACTGCTCCAAAGCAAGTTGAGATTCCATTCAAGCCGGCTCGTGTTCTGTTGCAGGATTTTACTGGTGTGCCAGCTGTGGTAGATCTTGCATGTATGCGTGATGCCATGAATAATCTTGGCGGGGACTCCGACAAAATCAATCCTTTGGTTCCTGTGGATCTTGTCGTGGATCATTCAGTTCAAGTTGATGTTGCTAGGTCTGAAAACGCGGTAAAAGCAAATATGGAACTTGAATTTCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAGTGGGGATCCAAAGCTTTCCAGAACATGCTTGTGGTTCCACCAGGATCTGGTATCGTGCATCAGGTTAACCTTGAATATCTTGGACGAGTTGTCTTCAACACCGATGGAATGCTTTACCCTGATAGTGTTGTCGGAACTGATTCCCACACTACAATGATTGACGGTTTAGGTGTTGCTGGTTGGGGAGTTGGAGGAATTGAAGCAGAGGCCACAATGCTTGGGCAGCCAATGAGCATGGTTTTACCTGGTGTTGTTGGGTTCAAGTTATCTGGGAAACTGCGCAATGGTGTAACAGCTACTGATTTGGTTTTGACTGTAACCCAAATGTTAAGGAAGCATGGTGTCGTAGGCAAATTTGTTGAATTCCATGGGGATGGTGTGGGTAAAATATCACTTGCTGACAGGGCTACTATTGCCAACATGTCTCCCGAATATGGTGCAACAATGGGTTTCTTTCCAGTTGATCATGTTACTCTTCAGTACCTCAAATTAACTGGCCGAAGTGATGACACGGTTGCTATGATAGAAGCGTACTTACGTGCAAACAATATGTTTGTTGATTATAATGAGCCACAACAAGAAAGAGTCTACTCATCATACTTGGAGCTTGACCTTTCAGATGTAGAACCCTGTATTTCAGGGCCAAAGAGACCTCATGACCGAGTTACTTTGAAAGACATGAAAGCAGATTGGCATTCTTGTCTGGATAATAAAGTGGGATTCAAAGGTTTTGCAGTACCAAAGGAGGCACAAGACAAAGTTGCAAAATTTTCTTTTCATGGAGAACCAGCAGAGCTTAGGCATGGCAGTGTTGTGATTGCTGCCATCACAAGTTGCACAAATACATCAAACCCTAGTGTCATGCTTGGGGCAGGGCTTGTTGCAAAAAAGGCCTGTGAATTGGGCCTAAAGGTCAAACCATGGATTAAAACAAGTCTTGCTCCAGGCTCTGGAGTTGTTACAAAATATTTGCTCCAAAGTGGGTTGCAGAAGTATTTAAATGAGCAAGGTTTCAACATTGTTGGTTATGGTTGCACAACATGTATCGGCAATTCAGGGGAATTGGATGAATCTGTTGGTGCCGCTATAACTGAAAATGATATCATTGCATCAGCTGTTCTCTCCGGGAATCGAAACTTCGAGGGGCGTGTTCACGCCTTAACAAGAGCAAACTATCTTGCATCTCCCCCTTTGGTTGTTGCTTATGCCCTTGCTGGCACCGTTGATATTGATTTTGAGAAGGAACCAATTGGAGTTGGAAAAGATGGGAAGGATGTATATTTTAGGGATATCTGGCCAAGCACCGAAGAAATTGCGGACGTTGTTCAATCGAGTGTTCTTCCGGCGATGTTTAAGAGTACTTATGAATCCATCACCCAGGGAAATCCCATGTGGAATGACCTATCAGTCCCTGAATCTAAGCTATACTCATGGGATACAAATTCTACCTACATTCATGAGCCACCATATTTCAAAAACATGACAATGGACCCCCCTGGGGCCCACGGTGTGAAGGATGCCTATTGCTTGCTGAACTTTGGTGACAGTATCACAACGGATCACATTTCGCCCGCAGGAAGCATTCACAAGGACAGCCCGGCTGCAAAGTTTCTTCTTGAACATGGTGTTGATCGCAAGGACTTCAATTCCTATGGCAGTCGTCGAGGTAATGATGAAATTATGGCGAGGGGTACTTTTGCCAATATCCGCCTTGTCAACAAGCTCTTAAACGGGGAAGTTGGCCCAAACACGGTACATGTTCCCACAGGAGAGAAACTCTCGGTGTTTGATGCAGCATCAAGATACAAATCTGCTGGTGAGGATACAATTGTGTTGGCGGGATCAGAGTATGGAAGTGGAAGCTCCAGAGATTGGGCTGCCAAGGGTCCTATGTTATTGGGAGTTAAAGCAGTAATTGCAAAAAGCTTTGAGAGGATTCATCGCAGTAATTTGGTAGGAATGGGTATTATACCACTTTGCTTCAAAGCCGGTGAGGATGCCGACACACTACAGTTGACAGGTCATGAACGATATACCATTGACCTACCGAGCAACATTAGTGAGATCCGGCCTGGTCAAGATGTCAATGTCAGCACCGACACTGGAAAGTCGTTCACGTGTACTGTTCGCTTTGACACTGAGGTGGAATTGGCTTATTTCAATCATGGTGGCATCCTTCCATATGTTATCAGACAACTAGCAGCACAGAAATGA 2991 45.37 MPITGPHSSALLRRASSRSSATRHFHSSLSGKSPSPSPSPSPLASHSRPHATASAAFRSLRSPWSHGVDWKSPASLSSQIRTTASPVLDRFHRTLATIASKNVFNGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKTAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDSDKINPLVPVDLVVDHSVQVDVARSENAVKANMELEFQRNKERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNEPQQERVYSSYLELDLSDVEPCISGPKRPHDRVTLKDMKADWHSCLDNKVGFKGFAVPKEAQDKVAKFSFHGEPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLKVKPWIKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGELDESVGAAITENDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGVGKDGKDVYFRDIWPSTEEIADVVQSSVLPAMFKSTYESITQGNPMWNDLSVPESKLYSWDTNSTYIHEPPYFKNMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLEHGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPNTVHVPTGEKLSVFDAASRYKSAGEDTIVLAGSEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPSNISEIRPGQDVNVSTDTGKSFTCTVRFDTEVELAYFNHGGILPYVIRQLAAQK 996
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sain12g00656 996 PRINTS Aconitase family signature 244 257 IPR001030 -
Sain12g00656 996 PRINTS Aconitase family signature 311 326 IPR001030 -
Sain12g00656 996 PRINTS Aconitase family signature 373 386 IPR001030 -
Sain12g00656 996 PRINTS Aconitase family signature 387 400 IPR001030 -
Sain12g00656 996 PRINTS Aconitase family signature 268 276 IPR001030 -
Sain12g00656 996 PRINTS Aconitase family signature 297 310 IPR001030 -
Sain12g00656 996 PRINTS Aconitase family signature 534 545 IPR001030 -
Sain12g00656 996 PRINTS Aconitase family signature 596 609 IPR001030 -
Sain12g00656 996 PRINTS Aconitase family signature 469 483 IPR001030 -
Sain12g00656 996 ProSitePatterns Aconitase family signature 1. 530 546 IPR018136 -
Sain12g00656 996 FunFam Aconitate hydratase 757 994 - -
Sain12g00656 996 NCBIfam aconitate hydratase AcnA 120 992 IPR006249 -
Sain12g00656 996 Gene3D Aconitase, domain 3 104 469 IPR015931 -
Sain12g00656 996 CDD AcnA-IRP-Swivel 771 941 IPR044137 -
Sain12g00656 996 Gene3D Aconitase, domain 3 470 693 IPR015931 -
Sain12g00656 996 ProSitePatterns Aconitase family signature 2. 596 609 IPR018136 -
Sain12g00656 996 FunFam Aconitate hydratase 102 469 - -
Sain12g00656 996 MobiDBLite consensus disorder prediction 1 52 - -
Sain12g00656 996 MobiDBLite consensus disorder prediction 10 34 - -
Sain12g00656 996 SUPERFAMILY LeuD-IlvD-like 734 992 - -
Sain12g00656 996 CDD AcnA-IRP 183 667 - -
Sain12g00656 996 Pfam Aconitase C-terminal domain 794 922 IPR000573 -
Sain12g00656 996 Gene3D - 694 755 - -
Sain12g00656 996 Gene3D Aconitase, domain 4 758 994 IPR015928 -
Sain12g00656 996 Pfam Aconitase family (aconitate hydratase) 162 665 IPR001030 -
Sain12g00656 996 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 101 993 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Sain12g00656 996 SUPERFAMILY Aconitase iron-sulfur domain 116 730 IPR036008 -
Sain12g00656 996 FunFam cytoplasmic aconitate hydratase 470 693 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sain12g00656 K01681 aconitate hydratase [EC:4.2.1.3]
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Event-related genes

Select Gene_1 Gene_2 Event_name
138800 Sain12g00656 Sain13g02172
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Sain Sain-Chr12:15364328 Sain13g02568 Sain-Chr13:136826097 dispersed
Sain Sain-Chr12:15364328 Sain13g02172 Sain-Chr13:127542575 wgd